RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 TRAPPC11Q7Z392 1133 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 ANKEF1Q9NU02 776 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.45■□□□□ 0.77e-7■□□□□ 9
SMARCC1-201ENST00000254480 DNAJC3Q13217 504 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 SEMA3FQ13275 785 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 MIER2Q8N344 545 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 TPCN2Q8NHX9 752 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 EMC1Q8N766 993 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 PPP1R13LQ8WUF5 828 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 LZTS1Q9Y250 596 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 SNRPAP09012 282 aaKnown RBP19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 NPTX2P47972 431 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 PMS1P54277 932 aaKnown RBP19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 RNF180Q86T96 592 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 SEC16BQ96JE7 1060 aa19.45■□□□□ 0.7
SMARCC1-201ENST00000254480 TRIM65Q6PJ69 517 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 UBP1Q9NZI7 540 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 B2RBV5 119 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 TRIM49D1C9J1S8 452 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 PSMD3O43242 534 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 DEFB128Q7Z7B8 93 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 SRPK1Q96SB4 655 aaKnown RBP19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 RNF19AQ9NV58 838 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 UGP2Q16851 508 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 LY6KQ17RY6 165 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 CARNMT1Q8N4J0 409 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 ZC3H15Q8WU90 426 aaKnown RBP19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 FAM32AQ9Y421 112 aaKnown RBP19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 CYB561D2O14569 222 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 INPP5AQ14642 412 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 C9orf131Q5VYM1 1079 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 EPS8L3Q8TE67 593 aaKnown RBP19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 FAM111AQ96PZ2 611 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 TMEM150BA6NC51 233 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 ODC1P11926 461 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 ZBTB17Q13105 803 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 ZSWIM2Q8NEG5 633 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 EME1Q96AY2 570 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 CEP41Q9BYV8 373 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 CACNA2D2Q9NY47 1150 aa19.44■□□□□ 0.7
SMARCC1-201ENST00000254480 TPST1O60507 370 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 SRP72O76094 671 aaKnown RBP19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 SPASTQ9UBP0 616 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 RGL2O15211 777 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 BTNL9Q6UXG8 535 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 SLC47A2Q86VL8 602 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 OTUB1Q96FW1 271 aaPredicted RBP19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 NMRK2Q9NPI5 230 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 NEXMIFQ5QGS0 1516 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 TGM2P21980 687 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 CLEC17AQ6ZS10 378 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 PPP2R3CQ969Q6 453 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 GPRASP2Q96D09 838 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 CYP4F12Q9HCS2 524 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 GRIN3BO60391 1043 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 GYS1P13807 737 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 FCGRTP55899 365 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 FAM131BQ86XD5 332 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 OSMRQ99650 979 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 MANSC1Q9H8J5 431 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 RRN3P2A6NIE6 340 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 MAFGO15525 162 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 STAG3L1P0CL83 205 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 CENPAP49450 140 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 TOB1P50616 345 aaPredicted RBP19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 PPIL6Q8IXY8 311 aa19.43■□□□□ 0.7
SMARCC1-201ENST00000254480 FAM205AQ6ZU69 1335 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 SERPINB9P50453 376 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 SLC20A1Q8WUM9 679 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 MTIF3Q9H2K0 278 aaKnown RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 CFAP73A6NFT4 308 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 TTLL13PA6NNM8 815 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 ADCY3O60266 1144 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 MBL2P11226 248 aaPredicted RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 ABCE1P61221 599 aaKnown RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 SLC44A2Q8IWA5 706 aaPredicted RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 CASKIN2Q8WXE0 1202 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 STAMBPL1Q96FJ0 436 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 OSGEPQ9NPF4 335 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 EIF3HO15372 352 aaKnown RBP eCLIP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 ASS1P00966 412 aaKnown RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 EFEMP1Q12805 493 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 CLEC16AQ2KHT3 1053 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 SEMA6BQ9H3T3 888 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 PIH1D1Q9NWS0 290 aaKnown RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 C6orf203Q9P0P8 240 aaPredicted RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 A0A087WZ62 844 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 POU4F1Q01851 419 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 FBXO32Q969P5 355 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 FDXACB1Q9BRP7 624 aaPredicted RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 RPS6KL1Q9Y6S9 549 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 MADDQ8WXG6 1647 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 RALBP11234 206 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 PSMC6P62333 389 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 ZNF177Q13360 481 aaPredicted RBP19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 E2F7Q96AV8 911 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 TMEM169Q96HH4 297 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 SELENONQ9NZV5 590 aa19.42■□□□□ 0.7
SMARCC1-201ENST00000254480 UBQLN1Q9UMX0 589 aaKnown RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms