RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HEMK1Q9Y5R4 338 aaPredicted RBP15.06■□□□□ 0
SDC1-201ENST00000254351 ATP6V1G1O75348 118 aa15.06■□□□□ 0
SDC1-201ENST00000254351 ADSSP30520 456 aa15.06■□□□□ 0
SDC1-201ENST00000254351 PTK7Q13308 1070 aa15.06■□□□□ 0
SDC1-201ENST00000254351 MED21Q13503 144 aa15.06■□□□□ 0
SDC1-201ENST00000254351 TTLL12Q14166 644 aaPredicted RBP15.06■□□□□ 0
SDC1-201ENST00000254351 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.06■□□□□ 0
SDC1-201ENST00000254351 RSPH3Q86UC2 560 aa15.06■□□□□ 0
SDC1-201ENST00000254351 DDX1Q92499 740 aaKnown RBP15.06■□□□□ 0
SDC1-201ENST00000254351 SKA1Q96BD8 255 aa15.06■□□□□ 0
SDC1-201ENST00000254351 RANBP17Q9H2T7 1088 aaKnown RBP15.06■□□□□ 0
SDC1-201ENST00000254351 MMADHCQ9H3L0 296 aaPredicted RBP15.06■□□□□ 0
SDC1-201ENST00000254351 LARSQ9P2J5 1176 aaKnown RBP15.06■□□□□ 0
SDC1-201ENST00000254351 APPL1Q9UKG1 709 aa15.06■□□□□ 0
SDC1-201ENST00000254351 LAMB2P55268 1798 aa15.05■□□□□ 0
SDC1-201ENST00000254351 VAV1P15498 845 aa15.05■□□□□ -0
SDC1-201ENST00000254351 PDE1BQ01064 536 aa15.05■□□□□ -0
SDC1-201ENST00000254351 AP3B2Q13367 1082 aa15.05■□□□□ -0
SDC1-201ENST00000254351 KRT39Q6A163 491 aa15.05■□□□□ -0
SDC1-201ENST00000254351 TMEM270Q6UE05 265 aa15.05■□□□□ -0
SDC1-201ENST00000254351 SYDE1Q6ZW31 735 aaPredicted RBP15.05■□□□□ -0
SDC1-201ENST00000254351 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.05■□□□□ -0
SDC1-201ENST00000254351 NAT14Q8WUY8 206 aa15.05■□□□□ -0
SDC1-201ENST00000254351 MKL1Q969V6 931 aa15.05■□□□□ -0
SDC1-201ENST00000254351 APOL6Q9BWW8 343 aa15.05■□□□□ -0
SDC1-201ENST00000254351 NYXQ9GZU5 481 aa15.05■□□□□ -0
SDC1-201ENST00000254351 AGTPBP1Q9UPW5 1226 aa15.05■□□□□ -0
SDC1-201ENST00000254351 TRPA1O75762 1119 aa15.05■□□□□ -0
SDC1-201ENST00000254351 MTA2O94776 668 aa15.05■□□□□ -0
SDC1-201ENST00000254351 PRELPP51888 382 aa15.05■□□□□ -0
SDC1-201ENST00000254351 PPP6R3Q5H9R7 873 aaPredicted RBP15.05■□□□□ -0
SDC1-201ENST00000254351 SV2AQ7L0J3 742 aa15.05■□□□□ -0
SDC1-201ENST00000254351 IGDCC3Q8IVU1 814 aa15.05■□□□□ -0
SDC1-201ENST00000254351 ZNF276Q8N554 614 aa15.05■□□□□ -0
SDC1-201ENST00000254351 PPM1NQ8N819 430 aa15.05■□□□□ -0
SDC1-201ENST00000254351 PHACTR1Q9C0D0 580 aa15.05■□□□□ -0
SDC1-201ENST00000254351 ATXN10Q9UBB4 475 aa15.05■□□□□ -0
SDC1-201ENST00000254351 POLLQ9UGP5 575 aa15.05■□□□□ -0
SDC1-201ENST00000254351 GGA1Q9UJY5 639 aa15.05■□□□□ -0
SDC1-201ENST00000254351 F5H423 210 aaPredicted RBP15.04■□□□□ -0
SDC1-201ENST00000254351 SPECC1L-ADORA2AF8WAN1 911 aa15.04■□□□□ -0
SDC1-201ENST00000254351 PROSCO94903 275 aa15.04■□□□□ -0
SDC1-201ENST00000254351 C6orf222P0C671 652 aaPredicted RBP15.04■□□□□ -0
SDC1-201ENST00000254351 MAGEA10P43363 369 aaPredicted RBP15.04■□□□□ -0
SDC1-201ENST00000254351 GALK1P51570 392 aa15.04■□□□□ -0
SDC1-201ENST00000254351 CENPCQ03188 943 aa15.04■□□□□ -0
SDC1-201ENST00000254351 KBTBD12Q3ZCT8 623 aa15.04■□□□□ -0
SDC1-201ENST00000254351 RABGAP1LQ5R372 815 aa15.04■□□□□ -0
SDC1-201ENST00000254351 FAXCQ5TGI0 409 aa15.04■□□□□ -0
SDC1-201ENST00000254351 SCARA3Q6AZY7 606 aa15.04■□□□□ -0
SDC1-201ENST00000254351 IYDQ6PHW0 289 aa15.04■□□□□ -0
SDC1-201ENST00000254351 ARHGAP24Q8N264 748 aa15.04■□□□□ -0
SDC1-201ENST00000254351 FAM213AQ9BRX8 229 aa15.04■□□□□ -0
SDC1-201ENST00000254351 FAM192AQ9GZU8 254 aa15.04■□□□□ -0
SDC1-201ENST00000254351 TDRKHQ9Y2W6 561 aaKnown RBP15.04■□□□□ -0
SDC1-201ENST00000254351 MTO1Q9Y2Z2 717 aaKnown RBP15.04■□□□□ -0
SDC1-201ENST00000254351 IGLV3-22A0A075B6J6 115 aa15.04■□□□□ -0
SDC1-201ENST00000254351 IGKV6D-41A0A0C4DH26 115 aa15.04■□□□□ -0
SDC1-201ENST00000254351 HLA-DOAP06340 250 aa15.04■□□□□ -0
SDC1-201ENST00000254351 SLC1A1P43005 524 aa15.04■□□□□ -0
SDC1-201ENST00000254351 PSMC5P62195 406 aa15.04■□□□□ -0
SDC1-201ENST00000254351 CHI3L2Q15782 390 aa15.04■□□□□ -0
SDC1-201ENST00000254351 DENND5BQ6ZUT9 1274 aa15.04■□□□□ -0
SDC1-201ENST00000254351 FBXL13Q8NEE6 735 aa15.04■□□□□ -0
SDC1-201ENST00000254351 OR6Y1Q8NGX8 325 aa15.04■□□□□ -0
SDC1-201ENST00000254351 CRYGNQ8WXF5 182 aa15.04■□□□□ -0
SDC1-201ENST00000254351 MCEEQ96PE7 176 aa15.04■□□□□ -0
SDC1-201ENST00000254351 ACCSQ96QU6 501 aa15.04■□□□□ -0
SDC1-201ENST00000254351 GRIP2Q9C0E4 1043 aa15.04■□□□□ -0
SDC1-201ENST00000254351 NDUFB10O96000 172 aa15.03■□□□□ -0
SDC1-201ENST00000254351 POTEJP0CG39 1038 aa15.03■□□□□ -0
SDC1-201ENST00000254351 TNNI1P19237 187 aa15.03■□□□□ -0
SDC1-201ENST00000254351 COG7P83436 770 aa15.03■□□□□ -0
SDC1-201ENST00000254351 BST1Q10588 318 aa15.03■□□□□ -0
SDC1-201ENST00000254351 GK3PQ14409 553 aa15.03■□□□□ -0
SDC1-201ENST00000254351 CMPK2Q5EBM0 449 aa15.03■□□□□ -0
SDC1-201ENST00000254351 RBM44Q6ZP01 1051 aaKnown RBP15.03■□□□□ -0
SDC1-201ENST00000254351 ZNF513Q8N8E2 541 aaPredicted RBP15.03■□□□□ -0
SDC1-201ENST00000254351 BANPQ8N9N5 519 aa15.03■□□□□ -0
SDC1-201ENST00000254351 AGR3Q8TD06 166 aa15.03■□□□□ -0
SDC1-201ENST00000254351 PRPF31Q8WWY3 499 aaKnown RBP15.03■□□□□ -0
SDC1-201ENST00000254351 CAMKK2Q96RR4 588 aa15.03■□□□□ -0
SDC1-201ENST00000254351 ADAMTS6Q9UKP5 1117 aa15.03■□□□□ -0
SDC1-201ENST00000254351 ATRNL1Q5VV63 1379 aa15.03■□□□□ -0
SDC1-201ENST00000254351 CAPN8A6NHC0 703 aa15.03■□□□□ -0
SDC1-201ENST00000254351 PSMD10O75832 226 aa15.03■□□□□ -0
SDC1-201ENST00000254351 INHBAP08476 426 aa15.03■□□□□ -0
SDC1-201ENST00000254351 GRAPQ13588 217 aa15.03■□□□□ -0
SDC1-201ENST00000254351 SEZ6Q53EL9 994 aa15.03■□□□□ -0
SDC1-201ENST00000254351 SLC10A5Q5PT55 438 aa15.03■□□□□ -0
SDC1-201ENST00000254351 GRAPLQ8TC17 118 aaPredicted RBP15.03■□□□□ -0
SDC1-201ENST00000254351 GDPD5Q8WTR4 605 aa15.03■□□□□ -0
SDC1-201ENST00000254351 PPP1R36Q96LQ0 422 aa15.03■□□□□ -0
SDC1-201ENST00000254351 MBOAT7Q96N66 472 aa15.03■□□□□ -0
SDC1-201ENST00000254351 WDR83Q9BRX9 315 aaKnown RBP15.03■□□□□ -0
SDC1-201ENST00000254351 SENP1Q9P0U3 644 aa15.03■□□□□ -0
SDC1-201ENST00000254351 IRS2Q9Y4H2 1338 aa15.03■□□□□ -0
SDC1-201ENST00000254351 DDTLA6NHG4 134 aaPredicted RBP15.03■□□□□ -0
SDC1-201ENST00000254351 IPO5O00410 1097 aaKnown RBP15.03■□□□□ -0
SDC1-201ENST00000254351 TBX3O15119 743 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms