RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 MYPNQ86TC9 1320 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 NAV1Q8NEY1 1877 aa12.56□□□□□ -0.4
USHBP1-201ENST00000252597 COPEO14579 308 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 P4HA2O15460 535 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 MAP3K7O43318 606 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 RBP3P10745 1247 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 PTPN4P29074 926 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 ELK3P41970 407 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 BPIFB4P59827 614 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 MMRN1Q13201 1228 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 C6orf163Q5TEZ5 329 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 RSPH3Q86UC2 560 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 CCDC110Q8TBZ0 833 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 SYTL5Q8TDW5 730 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 FAF2Q96CS3 445 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 ACSS2Q9NR19 701 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 ZNF277Q9NRM2 450 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 PCMTD2Q9NV79 361 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 SYNJ2BP-COX16A0A087WUM0 186 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 GRIN3BO60391 1043 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 CCDC22O60826 627 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 APRTP07741 180 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 F7P08709 466 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 GPC3P51654 580 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 EIF3EP60228 445 aaKnown RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 CENPCQ03188 943 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 LMNB2Q03252 620 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 KBTBD12Q3ZCT8 623 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 ACSBG2Q5FVE4 666 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 STRIP1Q5VSL9 837 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 MAB21L3Q8N8X9 362 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 ATP11CQ8NB49 1132 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 RBM41Q96IZ5 413 aaKnown RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 MIPEPQ99797 713 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 APOL6Q9BWW8 343 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 LRMDAQ9H2I8 198 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 RAB6BQ9NRW1 208 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 KCND2Q9NZV8 630 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 COX16Q9P0S2 106 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 SMG5Q9UPR3 1016 aaKnown RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 STARD13Q9Y3M8 1113 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 NR2E3Q9Y5X4 410 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 NUMBLQ9Y6R0 609 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 UBE4BO95155 1302 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 TRIM49D1C9J1S8 452 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 CIB2O75838 187 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 CST3P01034 146 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 UNGP13051 313 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 AMPD1P23109 780 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 SERPINB6P35237 376 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 PSMC1P62191 440 aaKnown RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 IRX1P78414 480 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 RBBP5Q15291 538 aaKnown RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 RINLQ6ZS11 566 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 SPATA18Q8TC71 538 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 NMUR2Q9GZQ4 415 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 NGRNQ9NPE2 291 aaKnown RBP12.55□□□□□ -0.4
USHBP1-201ENST00000252597 IP6K2Q9UHH9 426 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 PCDHA10Q9Y5I2 948 aa12.55□□□□□ -0.4
USHBP1-201ENST00000252597 FCHO1O14526 889 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 ATP5HO75947 161 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 SAT1P21673 171 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 HMGB2P26583 209 aaKnown RBP12.54□□□□□ -0.4
USHBP1-201ENST00000252597 RFC1P35251 1148 aaPredicted RBP12.54□□□□□ -0.4
USHBP1-201ENST00000252597 TNFSF9P41273 254 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 MYL6P60660 151 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 PRKCEQ02156 737 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 UNC45BQ8IWX7 931 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 ABRAQ8N0Z2 381 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 NSL1Q96IY1 281 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 FAM81BQ96LP2 452 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 SLITRK1Q96PX8 696 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 RNF19AQ9NV58 838 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 ANKRD31Q8N7Z5 1873 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 KBTBD13C9JR72 458 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 ZNF862O60290 1169 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 NOMO3P69849 1222 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 OGDHQ02218 1023 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 PEX6Q13608 980 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 RASA2Q15283 850 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 RGS9BPQ6ZS82 235 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 SYDE1Q6ZW31 735 aaPredicted RBP12.54□□□□□ -0.4
USHBP1-201ENST00000252597 FBXO27Q8NI29 283 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 SLC26A7Q8TE54 656 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 C10orf82Q8WW14 230 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 VTI1AQ96AJ9 217 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 TRIM11Q96F44 468 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 SCINQ9Y6U3 715 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 MAST2Q6P0Q8 1798 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 TBX10O75333 385 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 ZMPSTE24O75844 475 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 KRT3P12035 628 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 YARSP54577 528 aaKnown RBP12.54□□□□□ -0.4
USHBP1-201ENST00000252597 HADHBP55084 474 aaKnown RBP12.54□□□□□ -0.4
USHBP1-201ENST00000252597 GPX6P59796 221 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 CHI3L2Q15782 390 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 PRPF39Q86UA1 669 aaKnown RBP12.54□□□□□ -0.4
USHBP1-201ENST00000252597 RCOR2Q8IZ40 523 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 TTLL6Q8N841 843 aa12.54□□□□□ -0.4
USHBP1-201ENST00000252597 C12orf50Q8NA57 414 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms