RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LVRNQ6Q4G3 990 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 MAK16Q9BXY0 300 aaKnown RBP19.67■□□□□ 0.74
CPSF3-201ENST00000238112 FRMD8P1Q9BZ68 369 aaPredicted RBP19.67■□□□□ 0.74
CPSF3-201ENST00000238112 HOXC10Q9NYD6 342 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 CST8O60676 142 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 MSCO60682 206 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 PSMC4P43686 418 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 TFDP1Q14186 410 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 RHPN2Q8IUC4 686 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 PCYT2Q99447 389 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 PHACTR1Q9C0D0 580 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 SSU72Q9NP77 194 aaKnown RBP19.67■□□□□ 0.74
CPSF3-201ENST00000238112 FETUBQ9UGM5 382 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 RABGEF1Q9UJ41 708 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 FZD1Q9UP38 647 aa19.67■□□□□ 0.74
CPSF3-201ENST00000238112 TNS1Q9HBL0 1735 aaKnown RBP19.66■□□□□ 0.74
CPSF3-201ENST00000238112 CLUHO75153 1309 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 SPDYE16A6NNV3 312 aaPredicted RBP19.66■□□□□ 0.74
CPSF3-201ENST00000238112 MAFO75444 373 aaPredicted RBP19.66■□□□□ 0.74
CPSF3-201ENST00000238112 CD19P15391 556 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 GDF10P55107 478 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 YWHAEP62258 255 aaKnown RBP19.66■□□□□ 0.74
CPSF3-201ENST00000238112 SLC25A11Q02978 314 aaKnown RBP19.66■□□□□ 0.74
CPSF3-201ENST00000238112 KLHL38Q2WGJ6 581 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 KCNT1Q5JUK3 1230 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 DENND1BQ6P3S1 775 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 CPT1BQ92523 772 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 LRMDAQ9H2I8 198 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 SNCAIPQ9Y6H5 919 aa19.66■□□□□ 0.74
CPSF3-201ENST00000238112 SIGLEC16A6NMB1 481 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 SRGAP2CP0DJJ0 459 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 TARSP26639 723 aaKnown RBP19.65■□□□□ 0.74
CPSF3-201ENST00000238112 SSTR1P30872 391 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 PTPN20Q4JDL3 420 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 ANKRD22Q5VYY1 191 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 C3orf62Q6ZUJ4 267 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 BBS12Q6ZW61 710 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 ZBTB8OSQ8IWT0 167 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 ACO2Q99798 780 aaKnown RBP19.65■□□□□ 0.74
CPSF3-201ENST00000238112 C10orf88Q9H8K7 445 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 LRCH4O75427 683 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 FARP2O94887 1054 aaPredicted RBP19.65■□□□□ 0.74
CPSF3-201ENST00000238112 PRKCBP05771 671 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 ASPAP45381 313 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 GMPSP49915 693 aaPredicted RBP19.65■□□□□ 0.74
CPSF3-201ENST00000238112 GAD2Q05329 585 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 EFTUD2Q15029 972 aaKnown RBP eCLIP19.65■□□□□ 0.74
CPSF3-201ENST00000238112 PARP6Q2NL67 630 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 FNBP1LQ5T0N5 605 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 PRAMEF18Q5VWM3 479 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 FYB2Q5VWT5 728 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 THNSL1Q8IYQ7 743 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 AGGF1Q8N302 714 aaeCLIP19.65■□□□□ 0.742e-7■■■■□ 23.2
CPSF3-201ENST00000238112 NAT8LQ8N9F0 302 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 ZNF75CPQ92670 426 aaPredicted RBP19.65■□□□□ 0.74
CPSF3-201ENST00000238112 PAFAH2Q99487 392 aa19.65■□□□□ 0.74
CPSF3-201ENST00000238112 CPSF3Q9UKF6 684 aaKnown RBP19.65■□□□□ 0.74
CPSF3-201ENST00000238112 MED7O43513 233 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 TNNC2P02585 160 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 KDELR1P24390 212 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 IL1R2P27930 398 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 PSMC1P62191 440 aaKnown RBP19.64■□□□□ 0.74
CPSF3-201ENST00000238112 MAPK6Q16659 721 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 PALM2Q8IXS6 379 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 CHST13Q8NET6 341 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 JOSD2Q8TAC2 188 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 C10orf82Q8WW14 230 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 SYNCQ9H7C4 482 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 PIM2Q9P1W9 311 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 NXF1Q9UBU9 619 aaKnown RBP19.64■□□□□ 0.74
CPSF3-201ENST00000238112 HAO1Q9UJM8 370 aa19.64■□□□□ 0.74
CPSF3-201ENST00000238112 WFS1O76024 890 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 RPL22P35268 128 aaKnown RBP19.64■□□□□ 0.73
CPSF3-201ENST00000238112 MSS51Q4VC12 460 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 IER5Q5VY09 327 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 OTOAQ7RTW8 1153 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 DHX37Q8IY37 1157 aaKnown RBP19.64■□□□□ 0.73
CPSF3-201ENST00000238112 TAB3Q8N5C8 712 aaPredicted RBP19.64■□□□□ 0.73
CPSF3-201ENST00000238112 RNF149Q8NC42 400 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 FBXO36Q8NEA4 188 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 ANKRD36BP1Q96IX9 119 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 TMEM237Q96Q45 408 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 ACSS3Q9H6R3 686 aa19.64■□□□□ 0.73
CPSF3-201ENST00000238112 DIAPH2O60879 1101 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 ATP2A2P16615 1042 aaKnown RBP19.63■□□□□ 0.73
CPSF3-201ENST00000238112 TCF7P36402 384 aaPredicted RBP19.63■□□□□ 0.73
CPSF3-201ENST00000238112 ADGRD1Q6QNK2 874 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 RFX6Q8HWS3 928 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 PDIK1LQ8N165 341 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 KCTD6Q8NC69 237 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 FNIP1Q8TF40 1166 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 INPP5DQ92835 1189 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 UTP4Q969X6 686 aaKnown RBP19.63■□□□□ 0.73
CPSF3-201ENST00000238112 LHX5Q9H2C1 402 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 TJP2Q9UDY2 1190 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 HOXC6P09630 235 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 RASSF2P50749 326 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 LAMTOR4Q0VGL1 99 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 BBS9Q3SYG4 887 aa19.63■□□□□ 0.73
CPSF3-201ENST00000238112 CDCA2Q69YH5 1023 aaPredicted RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms