RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 TCEAL9Q9UHQ7 104 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SNCAIPQ9Y6H5 919 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SCINQ9Y6U3 715 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 KAT6AQ92794 2004 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 PLA2G6O60733 806 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 CCDC22O60826 627 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 FAM155BO75949 473 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 HAUS5O94927 633 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 CST3P01034 146 aaPredicted RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 ITGAVP06756 1048 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 DLDP09622 509 aaKnown RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 BGNP21810 368 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 AMPD1P23109 780 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 BRD2P25440 801 aaKnown RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 IL1R2P27930 398 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 RPL22P35268 128 aaKnown RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 CETN2P41208 172 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 LIG4P49917 911 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 NBPF20Q3BBV1 942 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 BBS9Q3SYG4 887 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 CES4AQ5XG92 561 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 OR52E8Q6IFG1 317 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 ALYREFQ86V81 257 aaKnown RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 UNC45BQ8IWX7 931 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 LMNTD2Q8IXW0 634 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 NAT8LQ8N9F0 302 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 SKA1Q96BD8 255 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 WNK4Q96J92 1243 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 VCPIP1Q96JH7 1222 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 FAM111AQ96PZ2 611 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 TSSK1BQ9BXA7 367 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 ACSS3Q9H6R3 686 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 ZNF395Q9H8N7 513 aaPredicted RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 ZWILCHQ9H900 591 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 PCDH9Q9HC56 1237 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 ARHGAP28Q9P2N2 729 aa13.02□□□□□ -0.33
NUP88-201ENST00000225696 ZNF70Q9UC06 446 aaPredicted RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.02□□□□□ -0.33
NUP88-201ENST00000225696 FAM237BA0A1B0GVD1 139 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 TTLL13PA6NNM8 815 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 GYG2O15488 501 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 SMIM24O75264 130 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 TROVE2P10155 538 aaKnown RBP eCLIP13.01□□□□□ -0.33
NUP88-201ENST00000225696 GNAT1P11488 350 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 CHRNA5P30532 468 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 ETV4P43268 484 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 JAK3P52333 1124 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 MRPS35P82673 323 aaKnown RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 RCN2Q14257 317 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 CDHR3Q6ZTQ4 885 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 SCYL3Q8IZE3 742 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 TMEM143Q96AN5 459 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 POLR3FQ9H1D9 316 aaPredicted RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 GINM1Q9NU53 330 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 AGO2Q9UKV8 859 aaKnown RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 CHMP2BQ9UQN3 213 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 ZBTB12Q9Y330 459 aaPredicted RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 SMAPO00193 183 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 AVILO75366 819 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 VHLP40337 213 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 ARFIP2P53365 341 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 ARL4CP56559 192 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 RASA2Q15283 850 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 TAF5Q15542 800 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 SEPT7Q16181 437 aaKnown RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 CCDC6Q16204 474 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 CMPK2Q5EBM0 449 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 MDH1BQ5I0G3 518 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 SPDYAQ5MJ70 313 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 DCUN1D2Q6PH85 259 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 CEP128Q6ZU80 1094 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 SH2D5Q6ZV89 423 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 CCDC60Q8IWA6 550 aaPredicted RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 SHKBP1Q8TBC3 707 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 TEKT4Q8WW24 435 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 FAM151AQ8WW52 585 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 TTC17Q96AE7 1141 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 NSL1Q96IY1 281 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 MECRQ9BV79 373 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 TRIM55Q9BYV6 548 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 NMUR2Q9GZQ4 415 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 PXMP2Q9NR77 195 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 KRT82Q9NSB4 513 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 RBAKQ9NYW8 714 aaPredicted RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 SEPT9Q9UHD8 586 aaPredicted RBP13.01□□□□□ -0.33
NUP88-201ENST00000225696 RIPK3Q9Y572 518 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 ASB3Q9Y575 518 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 PCDHA10Q9Y5I2 948 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 DOCK5Q9H7D0 1870 aa13.01□□□□□ -0.33
NUP88-201ENST00000225696 CST8O60676 142 aa13□□□□□ -0.33
NUP88-201ENST00000225696 AP1G2O75843 785 aa13□□□□□ -0.33
NUP88-201ENST00000225696 RGS20O76081 388 aa13□□□□□ -0.33
NUP88-201ENST00000225696 PSMG1O95456 288 aa13□□□□□ -0.33
NUP88-201ENST00000225696 FESP07332 822 aa13□□□□□ -0.33
NUP88-201ENST00000225696 MYL2P10916 166 aa13□□□□□ -0.33
NUP88-201ENST00000225696 HARSP12081 509 aaKnown RBP13□□□□□ -0.33
NUP88-201ENST00000225696 RFC1P35251 1148 aaPredicted RBP13□□□□□ -0.33
NUP88-201ENST00000225696 FAAP100Q0VG06 881 aa13□□□□□ -0.33
NUP88-201ENST00000225696 PRKD1Q15139 912 aaPredicted RBP13□□□□□ -0.33
NUP88-201ENST00000225696 TSNAXIP1Q2TAA8 658 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 188 ms