RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEF1	YKL054C	RAS2	P01120	322 aa	Known RBP	4.27	□□□□□ -1.73
DEF1	YKL054C	INO4	P13902	151 aa		4.27	□□□□□ -1.73
DEF1	YKL054C	SEC59	P20048	519 aa		4.27	□□□□□ -1.73
DEF1	YKL054C	TRM732	Q03496	1420 aa		4.27	□□□□□ -1.73
DEF1	YKL054C	YBR090C	P38253	122 aa		4.26	□□□□□ -1.73
DEF1	YKL054C	AIM18	P38884	321 aa		4.26	□□□□□ -1.73
DEF1	YKL054C	YDL241W	Q07738	123 aa		4.26	□□□□□ -1.73
DEF1	YKL054C	YOR385W	Q08909	290 aa		4.26	□□□□□ -1.73
DEF1	YKL054C	YET1	P35723	206 aa		4.26	□□□□□ -1.73
DEF1	YKL054C	SCP1	Q08873	200 aa		4.26	□□□□□ -1.73
DEF1	YKL054C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
DEF1	YKL054C	YJL027C	P47063	138 aa	Predicted RBP	4.25	□□□□□ -1.73
DEF1	YKL054C	YGL260W	P53056	76 aa		4.25	□□□□□ -1.73
DEF1	YKL054C	SCM4	P32564	187 aa		4.25	□□□□□ -1.73
DEF1	YKL054C	YER084W	P40057	128 aa		4.25	□□□□□ -1.73
DEF1	YKL054C	LSM8	P47093	109 aa	Known RBP	4.25	□□□□□ -1.73
DEF1	YKL054C	BOL2	P53082	120 aa		4.25	□□□□□ -1.73
DEF1	YKL054C	RCE1	Q03530	315 aa		4.25	□□□□□ -1.73
DEF1	YKL054C	UBC5	P15732	148 aa		4.24	□□□□□ -1.73
DEF1	YKL054C	HYP2	P23301	157 aa	Known RBP	4.24	□□□□□ -1.73
DEF1	YKL054C	FLX1	P40464	311 aa		4.24	□□□□□ -1.73
DEF1	YKL054C	YIR035C	P40579	254 aa		4.24	□□□□□ -1.73
DEF1	YKL054C	SPG1	P50088	95 aa		4.24	□□□□□ -1.73
DEF1	YKL054C	KRE5	P22023	1365 aa		4.24	□□□□□ -1.73
DEF1	YKL054C	GNA1	P43577	159 aa	Predicted RBP	4.23	□□□□□ -1.73
DEF1	YKL054C	YCL001W-A	P87012	153 aa		4.23	□□□□□ -1.73
DEF1	YKL054C	YMR103C	Q04436	120 aa		4.23	□□□□□ -1.73
DEF1	YKL054C	RPS23A	P0CX29	145 aa	Known RBP	4.23	□□□□□ -1.73
DEF1	YKL054C	RPS23B	P0CX30	145 aa		4.23	□□□□□ -1.73
DEF1	YKL054C	MAK31	P23059	88 aa		4.23	□□□□□ -1.73
DEF1	YKL054C	ERV15	P38312	142 aa		4.23	□□□□□ -1.73
DEF1	YKL054C	YEA6	P39953	335 aa		4.23	□□□□□ -1.73
DEF1	YKL054C	FEX1	Q08913	375 aa		4.22	□□□□□ -1.73
DEF1	YKL054C	FEX2	Q08991	375 aa		4.22	□□□□□ -1.73
DEF1	YKL054C	RPL13A	Q12690	199 aa	Predicted RBP	4.22	□□□□□ -1.73
DEF1	YKL054C	YGL194C-A	Q2V2P6	80 aa		4.22	□□□□□ -1.73
DEF1	YKL054C	MED11	Q99278	115 aa		4.22	□□□□□ -1.73
DEF1	YKL054C	ATG40	Q99325	256 aa		4.22	□□□□□ -1.73
DEF1	YKL054C	TMA19	P35691	167 aa	Known RBP	4.22	□□□□□ -1.73
DEF1	YKL054C	THG1	P53215	237 aa	Known RBP	4.22	□□□□□ -1.73
DEF1	YKL054C	YCR075W-A	Q3E830	75 aa		4.22	□□□□□ -1.73
DEF1	YKL054C	CCS1	P40202	249 aa	Known RBP	4.21	□□□□□ -1.74
DEF1	YKL054C	MZM1	Q03429	123 aa	Predicted RBP	4.21	□□□□□ -1.74
DEF1	YKL054C	YPR174C	Q06616	221 aa	Predicted RBP	4.21	□□□□□ -1.74
DEF1	YKL054C	TMC1	Q08422	150 aa	Predicted RBP	4.21	□□□□□ -1.74
DEF1	YKL054C	YLR236C	A0A023PZG4	107 aa		4.2	□□□□□ -1.74
DEF1	YKL054C	RPL33B	P41056	107 aa	Known RBP	4.2	□□□□□ -1.74
DEF1	YKL054C	IRC19	Q07843	230 aa		4.2	□□□□□ -1.74
DEF1	YKL054C	SNF11	P38956	169 aa		4.19	□□□□□ -1.74
DEF1	YKL054C	TIR3	P40552	269 aa		4.19	□□□□□ -1.74
DEF1	YKL054C	YFL012W	P43580	148 aa		4.19	□□□□□ -1.74
DEF1	YKL054C	ERG25	P53045	309 aa		4.19	□□□□□ -1.74
DEF1	YKL054C	ATG41	Q12048	136 aa		4.19	□□□□□ -1.74
DEF1	YKL054C	YEL045C	P32616	141 aa		4.19	□□□□□ -1.74
DEF1	YKL054C	YKL044W	P36092	106 aa		4.19	□□□□□ -1.74
DEF1	YKL054C	COX5B	P00425	151 aa		4.18	□□□□□ -1.74
DEF1	YKL054C	NHP10	Q03435	203 aa		4.18	□□□□□ -1.74
DEF1	YKL054C	YHP1	Q04116	353 aa		4.18	□□□□□ -1.74
DEF1	YKL054C	YPR013C	Q12145	317 aa		4.18	□□□□□ -1.74
DEF1	YKL054C	GTT2	Q12390	233 aa		4.18	□□□□□ -1.74
DEF1	YKL054C	SPA2	P23201	1466 aa	Known RBP	4.18	□□□□□ -1.74
DEF1	YKL054C	PHO88	P38264	188 aa	Predicted RBP	4.17	□□□□□ -1.74
DEF1	YKL054C	UPS3	Q04006	179 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	SOM1	Q05676	74 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	UIP4	Q08926	304 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	HAP3	P13434	144 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	YCR099C	P25657	155 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	UTH1	P36135	365 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	YFR035C	P43608	114 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	KEI1	Q06346	221 aa		4.17	□□□□□ -1.74
DEF1	YKL054C	RPL26A	P05743	127 aa	Known RBP	4.16	□□□□□ -1.74
DEF1	YKL054C	FYV5	P25585	152 aa		4.16	□□□□□ -1.74
DEF1	YKL054C	CLB6	P32943	380 aa		4.16	□□□□□ -1.74
DEF1	YKL054C	YEL067C	P39978	195 aa		4.16	□□□□□ -1.74
DEF1	YKL054C	RPL26B	P53221	127 aa	Known RBP	4.16	□□□□□ -1.74
DEF1	YKL054C	PIR1	Q03178	341 aa		4.16	□□□□□ -1.74
DEF1	YKL054C	YGL041W-A	P0C5N3	154 aa		4.15	□□□□□ -1.74
DEF1	YKL054C	QCR10	P37299	77 aa		4.15	□□□□□ -1.74
DEF1	YKL054C	KNH1	P50112	268 aa		4.15	□□□□□ -1.74
DEF1	YKL054C	TDA2	P40045	126 aa		4.15	□□□□□ -1.75
DEF1	YKL054C	YJR146W	P47174	117 aa		4.15	□□□□□ -1.75
DEF1	YKL054C	ATP19	P81451	68 aa		4.14	□□□□□ -1.75
DEF1	YKL054C	ADE6	P38972	1358 aa	Known RBP	4.13	□□□□□ -1.75
DEF1	YKL054C	PDR11	P40550	1411 aa		4.13	□□□□□ -1.75
DEF1	YKL054C	DAD4	P69851	72 aa		4.13	□□□□□ -1.75
DEF1	YKL054C	ERV14	P53173	138 aa		4.13	□□□□□ -1.75
DEF1	YKL054C	YPR195C	Q06594	109 aa		4.13	□□□□□ -1.75
DEF1	YKL054C	YHR130C	P38834	111 aa		4.12	□□□□□ -1.75
DEF1	YKL054C	YIL059C	P40520	121 aa		4.12	□□□□□ -1.75
DEF1	YKL054C	YML079W	Q03629	201 aa		4.12	□□□□□ -1.75
DEF1	YKL054C	MSB2	P32334	1306 aa		4.12	□□□□□ -1.75
DEF1	YKL054C	YRF1-3	P0CX14	1859 aa		4.11	□□□□□ -1.75
DEF1	YKL054C	YRF1-7	P0CX15	1859 aa		4.11	□□□□□ -1.75
DEF1	YKL054C	YRF1-6	P53819	1859 aa		4.11	□□□□□ -1.75
DEF1	YKL054C	EMP24	P32803	203 aa	Known RBP	4.11	□□□□□ -1.75
DEF1	YKL054C	YGR164W	P53291	111 aa		4.11	□□□□□ -1.75
DEF1	YKL054C	GPI19	Q04082	140 aa		4.11	□□□□□ -1.75
DEF1	YKL054C	RAD28	Q12021	506 aa		4.11	□□□□□ -1.75
DEF1	YKL054C	SEC11	P15367	167 aa		4.11	□□□□□ -1.75
DEF1	YKL054C	YHL018W	P38744	120 aa	Predicted RBP	4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms