RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	TIR1	P10863	254 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	QRI5	P32344	111 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	YPT53	P36019	220 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	SFT2	P38166	215 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	OST3	P48439	350 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	HST4	P53688	370 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	SEN15	Q04675	128 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	ADH6	Q04894	360 aa	Known RBP	4.89	□□□□□ -1.63
RPT3	YDR394W	ATX2	Q12067	313 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	RPS22B	Q3E7Y3	130 aa	Known RBP	4.89	□□□□□ -1.63
RPT3	YDR394W	TEL1	P38110	2787 aa		4.89	□□□□□ -1.63
RPT3	YDR394W	MRS1	P07266	363 aa		4.88	□□□□□ -1.63
RPT3	YDR394W	YKL187C	P34231	750 aa		4.88	□□□□□ -1.63
RPT3	YDR394W	MTR2	P34232	184 aa	Known RBP	4.88	□□□□□ -1.63
RPT3	YDR394W	YKR045C	P36138	183 aa		4.88	□□□□□ -1.63
RPT3	YDR394W	NDE2	Q07500	545 aa		4.88	□□□□□ -1.63
RPT3	YDR394W	YIL134C-A	Q45U18	67 aa		4.88	□□□□□ -1.63
RPT3	YDR394W	YLR302C	O13544	120 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	MRPL44	P19956	98 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	SCM4	P32564	187 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	MRPL11	P36521	249 aa	Predicted RBP	4.87	□□□□□ -1.63
RPT3	YDR394W	YPT10	P38146	199 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	MIX23	P38162	196 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	RRT1	P38192	103 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	YJL213W	P40896	331 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	BNA1	P47096	177 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	YDL183C	P48569	320 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	RAV2	Q03956	351 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	GIM5	Q04493	163 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	ATO3	Q12359	275 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	YCL001W-B	Q96VH2	84 aa		4.87	□□□□□ -1.63
RPT3	YDR394W	DDI2	P0CH63	225 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	DDI3	P0CH64	225 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	SPS100	P13130	326 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	FUN14	P18411	198 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	YHL044W	P38727	235 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	YNL234W	P53857	426 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	AYT1	Q12226	474 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	SPO24	Q3E752	67 aa		4.86	□□□□□ -1.63
RPT3	YDR394W	TRA1	P38811	3744 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	YER190C-B	P0CX94	160 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	YEL077W-A	P0CX95	160 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	YGR296C-B	P0CX96	160 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	YPL283W-B	P0CX97	160 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	YPR204C-A	P0CX98	160 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	PHO85	P17157	305 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	YKL102C	P34249	101 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	LSM2	P38203	95 aa	Known RBP	4.85	□□□□□ -1.63
RPT3	YDR394W	AME1	P38313	324 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	GZF3	P42944	551 aa	Known RBP	4.85	□□□□□ -1.63
RPT3	YDR394W	RPA43	P46669	326 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	NCA3	P46955	337 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	COX18	P53239	316 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	YGR151C	P53287	111 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	IZH1	Q03419	316 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	FYV7	Q12247	151 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	JID1	Q12350	301 aa		4.85	□□□□□ -1.63
RPT3	YDR394W	ERG27	Q12452	347 aa	Known RBP	4.85	□□□□□ -1.63
RPT3	YDR394W	HTB2	P02294	131 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	YHR213W	P0CI67	198 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	CUP2	P15315	225 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	MRPL20	P22354	195 aa	Predicted RBP	4.84	□□□□□ -1.63
RPT3	YDR394W	PAM17	P36147	197 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	YBR090C	P38253	122 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	IMP2	P46972	177 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	TOM7	P53507	60 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	DUG3	P53871	357 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	YMR166C	Q03829	368 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	TRI1	Q05024	226 aa		4.84	□□□□□ -1.63
RPT3	YDR394W	CYC3	P06182	269 aa		4.83	□□□□□ -1.64
RPT3	YDR394W	GAT2	P40209	560 aa		4.83	□□□□□ -1.64
RPT3	YDR394W	YIR020C	P40575	100 aa		4.83	□□□□□ -1.64
RPT3	YDR394W	ABM1	P47146	123 aa		4.83	□□□□□ -1.64
RPT3	YDR394W	UBC11	P52492	156 aa		4.83	□□□□□ -1.64
RPT3	YDR394W	ATG33	Q06485	197 aa		4.83	□□□□□ -1.64
RPT3	YDR394W	YCR024C-B	Q3E7Z8	88 aa		4.83	□□□□□ -1.64
RPT3	YDR394W	YBR056W-A	I2HB52	66 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	MRPL31	P14063	131 aa	Predicted RBP	4.82	□□□□□ -1.64
RPT3	YDR394W	TIR2	P33890	251 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	PAU16	P35994	123 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	MRPL38	P35996	138 aa	Predicted RBP	4.82	□□□□□ -1.64
RPT3	YDR394W	PAU7	P39545	55 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	CDC40	P40968	455 aa	Predicted RBP	4.82	□□□□□ -1.64
RPT3	YDR394W	YFR045W	P43617	309 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	YJL027C	P47063	138 aa	Predicted RBP	4.82	□□□□□ -1.64
RPT3	YDR394W	YGL118C	P53132	145 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	YML122C	Q03207	126 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	CNL1	Q06333	122 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	POM33	Q12164	279 aa		4.82	□□□□□ -1.64
RPT3	YDR394W	UTP23	Q12339	254 aa	Known RBP	4.82	□□□□□ -1.64
RPT3	YDR394W	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.82	□□□□□ -1.64
RPT3	YDR394W	PRP8	P33334	2413 aa	Known RBP	4.81	□□□□□ -1.64
RPT3	YDR394W	ATP5	P09457	212 aa		4.81	□□□□□ -1.64
RPT3	YDR394W	RPL31B	P0C2H9	113 aa	Known RBP	4.81	□□□□□ -1.64
RPT3	YDR394W	ZRT1	P32804	376 aa		4.81	□□□□□ -1.64
RPT3	YDR394W	FZF1	P32805	299 aa		4.81	□□□□□ -1.64
RPT3	YDR394W	TEM1	P38987	245 aa		4.81	□□□□□ -1.64
RPT3	YDR394W	GPP2	P40106	250 aa	Known RBP	4.81	□□□□□ -1.64
RPT3	YDR394W	YIL077C	P40508	320 aa		4.81	□□□□□ -1.64
RPT3	YDR394W	TDA4	P47153	279 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms