RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SPIRE2Q8WWL2 714 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 NDEL1Q9GZM8 345 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 WDCPQ9H6R7 721 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 LATS2Q9NRM7 1088 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 RAD18Q9NS91 495 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 HOMER3Q9NSC5 361 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 TAB2Q9NYJ8 693 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 MEGF6O75095 1541 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 CEP104O60308 925 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 HPGDP15428 266 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 SYT1P21579 422 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 PTPN3P26045 913 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 VCPP55072 806 aaKnown RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D25Q3MII6 688 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 RABL6Q3YEC7 729 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 FBXO47Q5MNV8 452 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 MPZL3Q6UWV2 235 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 C18orf8Q96DM3 657 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 MTMR9Q96QG7 549 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 TARS2Q9BW92 718 aaKnown RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 TXLNGQ9NUQ3 528 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 CCDC189A1A4V9 331 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 CCL16O15467 120 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 JAK2O60674 1132 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 BAIAP3O94812 1187 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 RLBP1P12271 317 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 HPDP32754 393 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 RPL9P32969 192 aaKnown RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 OR1D2P34982 312 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 PTRHD1Q6GMV3 140 aaKnown RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 GRAMD4Q6IC98 578 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 SRRM1Q8IYB3 904 aaKnown RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 MAFAQ8NHW3 353 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-218ENST00000640036 BRI3BPQ8WY22 251 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 OR8D1Q8WZ84 308 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 NEURL4Q96JN8 1562 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 ARHGAP39Q9C0H5 1083 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 TMX1Q9H3N1 280 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 CRLS1Q9UJA2 301 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 PCDHB2Q9Y5E7 798 aa5.26□□□□□ -1.57
SCN1A-218ENST00000640036 CNTNAP2Q9UHC6 1331 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NFIBO00712 420 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NDUFS3O75489 264 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 F9P00740 461 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 PLS3P13797 630 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ARRB1P49407 418 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NCKAP1LP55160 1127 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ACTN3Q08043 901 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 XRCC4Q13426 336 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 LRRC41Q15345 812 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 C8orf34Q49A92 452 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 PDCD2LQ9BRP1 358 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 BBS2Q9BXC9 721 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 KDM4CQ9H3R0 1056 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CD207Q9UJ71 328 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 KCPQ6ZWJ8 1503 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CACNB4O00305 520 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CNPP09543 421 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SLC2A4P14672 509 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TNNI3P19429 210 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ADCY8P40145 1251 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NSUN2Q08J23 767 aaKnown RBP eCLIP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 PTK7Q13308 1070 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 APOBEC3HQ6NTF7 200 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ESRP1Q6NXG1 681 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 DBF4BQ8NFT6 615 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 RAB17Q9H0T7 212 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 NSUN3Q9H649 340 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 KCNQ5Q9NR82 932 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MED1Q15648 1581 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CFAP69A5D8W1 941 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D4O60343 1298 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 BMP10O95393 424 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ITGB3P05106 788 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 RB1P06400 928 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CYP21A2P08686 494 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 JMJD7P0C870 316 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 GCLMP48507 274 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MAP3K10Q02779 954 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 GFPT1Q06210 699 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CAMK2GQ13555 558 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MORC3Q14149 939 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 DCLRE1AQ6PJP8 1040 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 TDHQ8IZJ6 230 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 FBXL13Q8NEE6 735 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MCRS1Q96EZ8 462 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 FAM163AQ96GL9 167 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 KLF15Q9UIH9 416 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 MID2Q9UJV3 735 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 KIAA1257Q9ULG3 409 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 GIT1Q9Y2X7 761 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 HEY1Q9Y5J3 304 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 POTEMA6NI47 508 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CYP2A6P11509 494 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 GDI1P31150 447 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 CAPZA2P47755 286 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF280AP59817 542 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 SNRPFP62306 86 aaKnown RBP5.25□□□□□ -1.57
SCN1A-218ENST00000640036 DYNLT1P63172 113 aa5.25□□□□□ -1.57
SCN1A-218ENST00000640036 GRIK3Q13003 919 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms