RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TRDMT1O14717 391 aaKnown RBP16.19■□□□□ 0.18
SYNE2-228ENST00000639659 KCNK5O95279 499 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 PIGRP01833 764 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 GALK1P51570 392 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 AMPD2Q01433 879 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 TSPY1Q01534 308 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 MCM6Q14566 821 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 PLK5Q496M5 336 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 ZC2HC1CQ53FD0 456 aaPredicted RBP16.19■□□□□ 0.18
SYNE2-228ENST00000639659 RIN3Q8TB24 985 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 C2orf15Q8WU43 125 aaKnown RBP16.19■□□□□ 0.18
SYNE2-228ENST00000639659 TSPAN18Q96SJ8 248 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 P2RY13Q9BPV8 354 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 KIF9Q9HAQ2 790 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 FBRSL1Q9HCM7 1045 aaKnown RBP16.19■□□□□ 0.18
SYNE2-228ENST00000639659 VPS45Q9NRW7 570 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 KIF3AQ9Y496 699 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 DENND4CQ5VZ89 1909 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 ANO9A1A5B4 782 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 H3BQV1 296 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 PAX3P23760 479 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 WEE1P30291 646 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 UBA7P41226 1012 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 IFNAR2P48551 515 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 NOVA1P51513 510 aaKnown RBP16.18■□□□□ 0.18
SYNE2-228ENST00000639659 DGKEP52429 567 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 MTF1Q14872 753 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 SV2CQ496J9 727 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 TMEM150AQ86TG1 271 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 TTC30AQ86WT1 665 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 CPA6Q8N4T0 437 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 NOC3LQ8WTT2 800 aaKnown RBP16.18■□□□□ 0.18
SYNE2-228ENST00000639659 TMLHEQ9NVH6 421 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 ZMYM5Q9UJ78 669 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 AGO2Q9UKV8 859 aaKnown RBP16.18■□□□□ 0.18
SYNE2-228ENST00000639659 DERAQ9Y315 318 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 PCDHGA5Q9Y5G8 931 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 WNT6Q9Y6F9 365 aa16.18■□□□□ 0.18
SYNE2-228ENST00000639659 CCDC163A0A0D9SF12 145 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 KPNA7A9QM74 516 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 AKAP3O75969 853 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 APBB3O95704 486 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 F11P03951 625 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 CKMP06732 381 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 ADRB2P07550 413 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 CSH1P0DML2 217 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 CSH2P0DML3 217 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 HMGA1P17096 107 aaKnown RBP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 PLCG1P19174 1290 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 DRD1P21728 446 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 ACAT1P24752 427 aaKnown RBP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 DDX6P26196 483 aaKnown RBP eCLIP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 GJA4P35212 333 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 SEC13P55735 322 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 FOXC1Q12948 553 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 DMC1Q14565 340 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 KARSQ15046 597 aaKnown RBP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 PDGFRLQ15198 375 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 DDR2Q16832 855 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 PLA2G2CQ5R387 149 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 EFCAB13Q8IY85 973 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 CAMKK1Q8N5S9 505 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 LRRC15Q8TF66 581 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 EXOC4Q96A65 974 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 ZNF560Q96MR9 790 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 LSM14BQ9BX40 385 aaKnown RBP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 TPSD1Q9BZJ3 242 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 DUSP15Q9H1R2 295 aaPredicted RBP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 IKZF4Q9H2S9 585 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 ASB7Q9H672 318 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 DUS2Q9NX74 493 aaKnown RBP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 CIZ1Q9ULV3 898 aaPredicted RBP16.17■□□□□ 0.18
SYNE2-228ENST00000639659 C2CD2Q9Y426 696 aa16.17■□□□□ 0.18
SYNE2-228ENST00000639659 C4orf47A7E2U8 309 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 TM4SF5O14894 197 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 GIPC1O14908 333 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 RHOBTB1O94844 696 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 CAVIN2O95810 425 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 POLR2BP30876 1174 aaKnown RBP16.16■□□□□ 0.18
SYNE2-228ENST00000639659 TFAMQ00059 246 aaKnown RBP16.16■□□□□ 0.18
SYNE2-228ENST00000639659 ZNF252P-AS1Q0IIN9 211 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 SMARCB1Q12824 385 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 MON1AQ86VX9 555 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 SCN4BQ8IWT1 228 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 KCTD17Q8N5Z5 321 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 POMGNT1Q8WZA1 660 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 CD101Q93033 1021 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 ACDQ96AP0 544 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 ECT2Q9H8V3 914 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 ZFHX4Q86UP3 3567 aa16.16■□□□□ 0.18
SYNE2-228ENST00000639659 LAMA1P25391 3075 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 FRYQ5TBA9 3013 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 TRAV19A0A0A6YYK7 116 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 SPINK2P20155 84 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 CYP2F1P24903 491 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 ZNF131P52739 623 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 SHC2P98077 582 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 NFE2Q16621 373 aaPredicted RBP16.15■□□□□ 0.18
SYNE2-228ENST00000639659 CCDC142Q17RM4 750 aa16.15■□□□□ 0.18
SYNE2-228ENST00000639659 FBXO43Q4G163 708 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms