RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TARM1B6A8C7 271 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 H3BUI4 141 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 GNAI2P04899 355 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 FAM163BP0C2L3 166 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 AKAP5P24588 427 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 SSBP2P81877 361 aaPredicted RBP5.38□□□□□ -1.55
CD44-239ENST00000639002 HPS3Q969F9 1004 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 NELL2Q99435 816 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 SLC29A3Q9BZD2 475 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 DLL3Q9NYJ7 618 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 FLRT1Q9NZU1 646 aa5.38□□□□□ -1.55
CD44-239ENST00000639002 H0YIZ8 118 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 PROSER3Q2NL68 480 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 TMEM119Q4V9L6 283 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 PLAC9Q5JTB6 97 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 ATAT1Q5SQI0 421 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 ZBTB46Q86UZ6 589 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 SCARB1Q8WTV0 552 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 ATRIPQ8WXE1 791 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 SLC35A4Q96G79 324 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 TTYH3Q9C0H2 523 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 PCDHA6Q9UN73 950 aa5.37□□□□□ -1.55
CD44-239ENST00000639002 UNC5CO95185 931 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 ZNF81P51508 661 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 NEK2P51955 445 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 ATXN1P54253 815 aaKnown RBP5.36□□□□□ -1.55
CD44-239ENST00000639002 SOX8P57073 446 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 LILRA4P59901 499 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 LLGL1Q15334 1064 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 PTPROQ16827 1216 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 LONRF3Q496Y0 759 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 ICE2Q659A1 982 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 ZNF425Q6IV72 752 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 ZNF66Q6ZN08 573 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 VGLL2Q8N8G2 317 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 PCSK9Q8NBP7 692 aaKnown RBP5.36□□□□□ -1.55
CD44-239ENST00000639002 HOOK2Q96ED9 719 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 CGRRF1Q99675 332 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 SLC12A5Q9H2X9 1139 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 ZNF70Q9UC06 446 aaPredicted RBP5.36□□□□□ -1.55
CD44-239ENST00000639002 IP6K2Q9UHH9 426 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 SERTAD3Q9UJW9 196 aa5.36□□□□□ -1.55
CD44-239ENST00000639002 ABLIM3O94929 683 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 IL6RP08887 468 aaPredicted RBP5.35□□□□□ -1.55
CD44-239ENST00000639002 NDUFB7P17568 137 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 CLCN2P51788 898 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 TREML2Q5T2D2 321 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 ZNF618Q5T7W0 954 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 SFRP4Q6FHJ7 346 aaPredicted RBP5.35□□□□□ -1.55
CD44-239ENST00000639002 CEP85Q6P2H3 762 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 ANKRD16Q6P6B7 361 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 BRIX1Q8TDN6 353 aaKnown RBP5.35□□□□□ -1.55
CD44-239ENST00000639002 MRGPRX1Q96LB2 322 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 NUP88Q99567 741 aaPredicted RBP5.35□□□□□ -1.55
CD44-239ENST00000639002 PTDSS2Q9BVG9 487 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 BRINP2Q9C0B6 783 aa5.35□□□□□ -1.55
CD44-239ENST00000639002 TISP43B9A030 160 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 ERC2O15083 957 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 SLC16A3O15427 465 aaKnown RBP5.34□□□□□ -1.55
CD44-239ENST00000639002 JTBO76095 146 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 NXPH3O95157 252 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 PF4V1P10720 104 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 CYP2C18P33260 490 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 ALDH9A1P49189 494 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 LOXL3P58215 753 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 ZNF267Q14586 743 aaPredicted RBP5.34□□□□□ -1.55
CD44-239ENST00000639002 IQCB1Q15051 598 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 KHDC1LQ5JSQ8 128 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 AARS2Q5JTZ9 985 aaKnown RBP5.34□□□□□ -1.55
CD44-239ENST00000639002 KIAA1614Q5VZ46 1190 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 SUMO4Q6EEV6 95 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 ZCRB1Q8TBF4 217 aaKnown RBP5.34□□□□□ -1.55
CD44-239ENST00000639002 ATG4AQ8WYN0 398 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 SMG7Q92540 1137 aaKnown RBP5.34□□□□□ -1.55
CD44-239ENST00000639002 NAF1Q96HR8 494 aaKnown RBP5.34□□□□□ -1.55
CD44-239ENST00000639002 CDK5RAP3Q96JB5 506 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 ARMT1Q9H993 441 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 DUSP22Q9NRW4 184 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 SH3BP4Q9P0V3 963 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 ANKRD6Q9Y2G4 727 aa5.34□□□□□ -1.55
CD44-239ENST00000639002 FER1L4A9Z1Z3 1794 aa5.34□□□□□ -1.56
CD44-239ENST00000639002 TLR5O60602 858 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 ATXN1LP0C7T5 689 aaKnown RBP5.33□□□□□ -1.56
CD44-239ENST00000639002 PXNP49023 591 aaPredicted RBP5.33□□□□□ -1.56
CD44-239ENST00000639002 SLC10A2Q12908 348 aaPredicted RBP5.33□□□□□ -1.56
CD44-239ENST00000639002 GRM1Q13255 1194 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 SRSF7Q16629 238 aaKnown RBP eCLIP5.33□□□□□ -1.56
CD44-239ENST00000639002 LCE1AQ5T7P2 110 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 ARHGAP40Q5TG30 622 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 GRAMD1CQ8IYS0 662 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 STAG1Q8WVM7 1258 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 TBC1D5Q92609 795 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 C1GALT1C1Q96EU7 318 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 MACROD1Q9BQ69 325 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 AASDHPPTQ9NRN7 309 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 XPR1Q9UBH6 696 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 NDRG4Q9ULP0 352 aaKnown RBP5.33□□□□□ -1.56
CD44-239ENST00000639002 STXBP5LQ9Y2K9 1186 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 PLEKHM1Q9Y4G2 1056 aa5.33□□□□□ -1.56
CD44-239ENST00000639002 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms