RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 GOLGA6L10A6NI86 522 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 SYN1P17600 705 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 ITGB8P26012 769 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 COILP38432 576 aaPredicted RBP19.44■□□□□ 0.7
CLN3-263ENST00000637871 PTGIRP43119 386 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 EIF3BP55884 814 aaKnown RBP19.44■□□□□ 0.7
CLN3-263ENST00000637871 KATNAL2Q8IYT4 538 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 C11orf70Q9BRQ4 267 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 SEZ6LQ9BYH1 1024 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 TSPYL1Q9H0U9 437 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 PDZD7Q9H5P4 517 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 MINDY3Q9H8M7 445 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 MTRF1LQ9UGC7 380 aaKnown RBP19.44■□□□□ 0.7
CLN3-263ENST00000637871 ITGA11Q9UKX5 1188 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 TANC1Q9C0D5 1861 aa19.44■□□□□ 0.7
CLN3-263ENST00000637871 A0A1B0GUA9 196 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 SMIM35A0A1B0GVV1 85 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 B4GALT5O43286 388 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 CYP2C18P33260 490 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 ASPAP45381 313 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 GUCY2FP51841 1108 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 GSCP56915 257 aaPredicted RBP19.43■□□□□ 0.7
CLN3-263ENST00000637871 PIGHQ14442 188 aaPredicted RBP19.43■□□□□ 0.7
CLN3-263ENST00000637871 EMC10Q5UCC4 262 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 CCDC137Q6PK04 289 aaKnown RBP19.43■□□□□ 0.7
CLN3-263ENST00000637871 EXD1Q8NHP7 514 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 BTBD6Q96KE9 485 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 ACAP3Q96P50 834 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 FMO2Q99518 471 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 OSBPL7Q9BZF2 842 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 MIS12Q9H081 205 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 HIPK3Q9H422 1215 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 ZMYND8Q9ULU4 1186 aaPredicted RBP19.43■□□□□ 0.7
CLN3-263ENST00000637871 GINS2Q9Y248 185 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 SCN5AQ14524 2016 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 LACTBL1A8MY62 500 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 HMGB1P1B2RPK0 211 aaPredicted RBP19.43■□□□□ 0.7
CLN3-263ENST00000637871 CXCL8P10145 99 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 CKBP12277 381 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 MARCKSL1P49006 195 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 COPS2P61201 443 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 ZNF618Q5T7W0 954 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 TAF2Q6P1X5 1199 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 MMS22LQ6ZRQ5 1243 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 ERICH1Q86X53 443 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 CCDC105Q8IYK2 499 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 NLRP7Q8WX94 980 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 DDX27Q96GQ7 796 aaKnown RBP19.43■□□□□ 0.7
CLN3-263ENST00000637871 FAM84AQ96KN4 292 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 GCOM2Q9BZD3 368 aaPredicted RBP19.43■□□□□ 0.7
CLN3-263ENST00000637871 NR2E1Q9Y466 385 aa19.43■□□□□ 0.7
CLN3-263ENST00000637871 TMEM191CA6NGB0 347 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 PPFIA2O75334 1257 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 RPS6KA5O75582 802 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 RARAP10276 462 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 ARF4P18085 180 aaPredicted RBP19.42■□□□□ 0.7
CLN3-263ENST00000637871 GRM5P41594 1212 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 CCL23P55773 120 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 RBP5P82980 135 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 STILQ15468 1287 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 KIZQ2M2Z5 673 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 LEKR1Q6ZMV7 388 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 RCOR2Q8IZ40 523 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 NIPA2Q8N8Q9 360 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 ELMO3Q96BJ8 720 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 SCLYQ96I15 445 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 RBM41Q96IZ5 413 aaKnown RBP19.42■□□□□ 0.7
CLN3-263ENST00000637871 CDHR5Q9HBB8 845 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 ERVK-5Q9HDB9 667 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 CHORDC1Q9UHD1 332 aaPredicted RBP19.42■□□□□ 0.7
CLN3-263ENST00000637871 LTBP2Q14767 1821 aa19.42■□□□□ 0.7
CLN3-263ENST00000637871 ECEL1O95672 775 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 IQCF3P0C7M6 154 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 AXLP30530 894 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 LMAN1P49257 510 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 CAV1Q03135 178 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 LMNB2Q03252 620 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 TMEM132DQ14C87 1099 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 SIX1Q15475 284 aaPredicted RBP19.41■□□□□ 0.7
CLN3-263ENST00000637871 SGO2Q562F6 1265 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 DNAJC24Q6P3W2 148 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 TRAF7Q6Q0C0 670 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 C1orf127Q8N9H9 656 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 C3orf20Q8ND61 904 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 FNIP1Q8TF40 1166 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 SCLT1Q96NL6 688 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 CELF4Q9BZC1 486 aaKnown RBP19.41■□□□□ 0.7
CLN3-263ENST00000637871 DDX56Q9NY93 547 aaKnown RBP19.41■□□□□ 0.7
CLN3-263ENST00000637871 CDY2AQ9Y6F7 541 aa19.41■□□□□ 0.7
CLN3-263ENST00000637871 NDC80O14777 642 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 TSPAN1O60635 241 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 CHRNA1P02708 482 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 KRT19P08727 400 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 HSD17B3P37058 310 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 MRPS6P82932 125 aaKnown RBP19.4■□□□□ 0.7
CLN3-263ENST00000637871 SLMAPQ14BN4 828 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 ACAP1Q15027 740 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 JADE1Q6IE81 842 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 TMC3Q7Z5M5 1100 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 BBOF1Q8ND07 529 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms