RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 VNN2O95498 520 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 PTPN2P17706 415 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 GNL1P36915 607 aaPredicted RBP19.53■□□□□ 0.72
CLN3-259ENST00000637551 EPHB3P54753 998 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 CCDC40Q4G0X9 1142 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 FAM114A1Q8IWE2 563 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 TAS1R2Q8TE23 839 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 FAM84AQ96KN4 292 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 SYT15Q9BQS2 421 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 THAP9Q9H5L6 903 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 RAB20Q9NX57 234 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 USP34Q70CQ2 3546 aa19.53■□□□□ 0.72
CLN3-259ENST00000637551 DOCK6Q96HP0 2047 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 SOBPA7XYQ1 873 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 ASPAP45381 313 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 RPL10AP62906 217 aaKnown RBP19.52■□□□□ 0.72
CLN3-259ENST00000637551 DUSP4Q13115 394 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 VEPH1Q14D04 833 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 PABPC1LQ4VXU2 614 aaKnown RBP19.52■□□□□ 0.72
CLN3-259ENST00000637551 TCERG1LQ5VWI1 586 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 MYCBPAPQ8TBZ2 947 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 PSMG2Q969U7 264 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 ZNF512Q96ME7 567 aaPredicted RBP19.52■□□□□ 0.72
CLN3-259ENST00000637551 GDE1Q9NZC3 331 aa19.52■□□□□ 0.72
CLN3-259ENST00000637551 TULP1O00294 542 aaPredicted RBP19.51■□□□□ 0.71
CLN3-259ENST00000637551 OR4Q2P0C623 313 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 HAPLN1P10915 354 aaPredicted RBP19.51■□□□□ 0.71
CLN3-259ENST00000637551 FMO5P49326 533 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 DPCR1Q3MIW9 517 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 DCAF17Q5H9S7 520 aaPredicted RBP19.51■□□□□ 0.71
CLN3-259ENST00000637551 WDR44Q5JSH3 913 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 SCARA3Q6AZY7 606 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 LRRTM3Q86VH5 581 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 OSTM1Q86WC4 334 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 ATAD1Q8NBU5 361 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 EEF2KMTQ96G04 330 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 APOL5Q9BWW9 433 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 SRRTQ9BXP5 876 aaKnown RBP19.51■□□□□ 0.71
CLN3-259ENST00000637551 GPR88Q9GZN0 384 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 ANO10Q9NW15 660 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 EHD2Q9NZN4 543 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 IGSF9Q9P2J2 1179 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 NXF1Q9UBU9 619 aaKnown RBP19.51■□□□□ 0.71
CLN3-259ENST00000637551 TRIOO75962 3097 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 ATP8B3O60423 1300 aa19.51■□□□□ 0.71
CLN3-259ENST00000637551 GTPBP10A4D1E9 387 aaKnown RBP19.5■□□□□ 0.71
CLN3-259ENST00000637551 CCL16O15467 120 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 RHOP08100 348 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 FSHRP23945 695 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 TBXAS1P24557 533 aaPredicted RBP19.5■□□□□ 0.71
CLN3-259ENST00000637551 YWHAEP62258 255 aaKnown RBP19.5■□□□□ 0.71
CLN3-259ENST00000637551 TWF1Q12792 350 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 CYP4A22Q5TCH4 519 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 CRYBG2Q8N1P7 616 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 B3GALNT2Q8NCR0 500 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 FAM81BQ96LP2 452 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 TMEM209Q96SK2 561 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 ELOVL4Q9GZR5 314 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 ASAH2Q9NR71 780 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 DNMT3BQ9UBC3 853 aaKnown RBP19.5■□□□□ 0.71
CLN3-259ENST00000637551 CDH7Q9ULB5 785 aa19.5■□□□□ 0.71
CLN3-259ENST00000637551 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLN3-259ENST00000637551 A8MXQ7 604 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 KLHL40Q2TBA0 621 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 CBWD6Q4V339 395 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 CBWD3Q5JTY5 395 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 CBWD5Q5RIA9 395 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 SASS6Q6UVJ0 657 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 GRASPQ7Z6J2 395 aaPredicted RBP19.49■□□□□ 0.71
CLN3-259ENST00000637551 SPATA2LQ8IUW3 424 aaPredicted RBP19.49■□□□□ 0.71
CLN3-259ENST00000637551 OR6B3Q8NGW1 331 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 ENOX1Q8TC92 643 aaKnown RBP19.49■□□□□ 0.71
CLN3-259ENST00000637551 TRMT2BQ96GJ1 504 aaKnown RBP19.49■□□□□ 0.71
CLN3-259ENST00000637551 RPGRIP1Q96KN7 1286 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 SPATA17Q96L03 361 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 PGLYRP2Q96PD5 576 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 MRPL45Q9BRJ2 306 aaKnown RBP19.49■□□□□ 0.71
CLN3-259ENST00000637551 CRISPLD1Q9H336 500 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 ABI2Q9NYB9 513 aaPredicted RBP19.49■□□□□ 0.71
CLN3-259ENST00000637551 UXTQ9UBK9 157 aaPredicted RBP19.49■□□□□ 0.71
CLN3-259ENST00000637551 DENND4CQ5VZ89 1909 aa19.49■□□□□ 0.71
CLN3-259ENST00000637551 C2CD4DB7Z1M9 353 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 TRIM66O15016 1216 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 LETM1O95202 739 aaPredicted RBP19.48■□□□□ 0.71
CLN3-259ENST00000637551 AFPP02771 609 aaKnown RBP19.48■□□□□ 0.71
CLN3-259ENST00000637551 CSH1P0DML2 217 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 CSH2P0DML3 217 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 LMO2P25791 158 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 WEE1P30291 646 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 STX17P56962 302 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 STX1AQ16623 288 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 MGAT5BQ3V5L5 792 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 PRSS36Q5K4E3 855 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 HFE2Q6ZVN8 426 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 MTSS1LQ765P7 747 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 PDZD4Q76G19 769 aaPredicted RBP19.48■□□□□ 0.71
CLN3-259ENST00000637551 JAKMIP2Q96AA8 810 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 MYRFLQ96LU7 910 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 MED15Q96RN5 788 aa19.48■□□□□ 0.71
CLN3-259ENST00000637551 PHOX2BQ99453 314 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms