RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CRYBG2Q8N1P7 616 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 FEZF2Q8TBJ5 459 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 CD101Q93033 1021 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 SENP8Q96LD8 212 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 CPXM1Q96SM3 734 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 FAM49BQ9NUQ9 324 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 TDRD15B5MCY1 1934 aaKnown RBP17.85■□□□□ 0.45
CLN3-252ENST00000636907 MIF4GDA9UHW6 222 aaKnown RBP17.85■□□□□ 0.45
CLN3-252ENST00000636907 MYO1FO00160 1098 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 SPOPO43791 374 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 CEP104O60308 925 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 PFKMP08237 780 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 MARCKSL1P49006 195 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 PDCLQ13371 301 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 DCAF12L1Q5VU92 463 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 WSCD1Q658N2 575 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 ARHGAP17Q68EM7 881 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 DNAJC24Q6P3W2 148 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 FBXO46Q6PJ61 603 aaPredicted RBP17.85■□□□□ 0.45
CLN3-252ENST00000636907 ANKRD33Q7Z3H0 272 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 DBF4BQ8NFT6 615 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 ANKRD7Q92527 254 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 KRT35Q92764 455 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 STRIP2Q9ULQ0 834 aa17.85■□□□□ 0.45
CLN3-252ENST00000636907 ERBB2P04626 1255 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 HSPA8P11142 646 aaKnown RBP17.84■□□□□ 0.45
CLN3-252ENST00000636907 RNASE9P60153 205 aaKnown RBP17.84■□□□□ 0.45
CLN3-252ENST00000636907 RPL7AP62424 266 aaKnown RBP17.84■□□□□ 0.45
CLN3-252ENST00000636907 ITIH3Q06033 890 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 TUSC3Q13454 348 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 PKDCCQ504Y2 493 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 CLLU1OSQ5K130 101 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 PPP1R15BQ5SWA1 713 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 TTC30AQ86WT1 665 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 C3orf20Q8ND61 904 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 SPATA4Q8NEY3 305 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 ALG3Q92685 438 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 C18orf8Q96DM3 657 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 SELENOOQ9BVL4 669 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 WNT8AQ9H1J5 351 aa17.84■□□□□ 0.45
CLN3-252ENST00000636907 PROSCO94903 275 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 FAM163BP0C2L3 166 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 CCDC130P13994 396 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 GABRB2P47870 512 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 AARSP49588 968 aaKnown RBP eCLIP17.83■□□□□ 0.45
CLN3-252ENST00000636907 PSMC1P62191 440 aaKnown RBP17.83■□□□□ 0.45
CLN3-252ENST00000636907 TUBB4BP68371 445 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 FAAP100Q0VG06 881 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 TRIM60Q495X7 471 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 GLB1LQ6UWU2 654 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 DSTYKQ6XUX3 929 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 XYLT1Q86Y38 959 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 RASGEF1CQ8N431 466 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 GPR161Q8N6U8 529 aaKnown RBP17.83■□□□□ 0.45
CLN3-252ENST00000636907 UBL4BQ8N7F7 174 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 MSANTD4Q8NCY6 345 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 ACTRT1Q8TDG2 376 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 DIS3LQ8TF46 1054 aaKnown RBP17.83■□□□□ 0.45
CLN3-252ENST00000636907 UBE2Q2Q8WVN8 375 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 SYNCQ9H7C4 482 aa17.83■□□□□ 0.45
CLN3-252ENST00000636907 TMEM191CA6NGB0 347 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 GOLGA8SH3BPF8 625 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 GABRDO14764 452 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 CTNNA2P26232 953 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 CTNNA1P35221 906 aaKnown RBP17.83■□□□□ 0.44
CLN3-252ENST00000636907 PEX5P50542 639 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 GSCP56915 257 aaPredicted RBP17.83■□□□□ 0.44
CLN3-252ENST00000636907 TLE2Q04725 743 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 TCTN1Q2MV58 587 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 TIGD5Q53EQ6 642 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 CD300LGQ6UXG3 332 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 DDX27Q96GQ7 796 aaKnown RBP17.83■□□□□ 0.44
CLN3-252ENST00000636907 SCLYQ96I15 445 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 MCEEQ96PE7 176 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 CARD9Q9H257 536 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 HIPK3Q9H422 1215 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 HESX1Q9UBX0 185 aa17.83■□□□□ 0.44
CLN3-252ENST00000636907 TANC1Q9C0D5 1861 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 DCDC2CA8MYV0 355 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 TULP2O00295 520 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 ENPP3O14638 875 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 RHOXF2BP0C7M4 288 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 COL6A1P12109 1028 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 ACAT1P24752 427 aaKnown RBP17.82■□□□□ 0.44
CLN3-252ENST00000636907 ADORA2BP29275 332 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 SLC1A1P43005 524 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 PAN2Q504Q3 1202 aaKnown RBP17.82■□□□□ 0.44
CLN3-252ENST00000636907 DCUN1D2Q6PH85 259 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 SEPT8Q92599 483 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 ARMC5Q96C12 935 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 TNIP3Q96KP6 325 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 UROC1Q96N76 676 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 RHOXF2Q9BQY4 288 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.82■□□□□ 0.443e-6■□□□□ 10.1
CLN3-252ENST00000636907 DNAI2Q9GZS0 605 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 ANKZF1Q9H8Y5 726 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 ST7Q9NRC1 585 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 RBM12Q9NTZ6 932 aaKnown RBP17.82■□□□□ 0.44
CLN3-252ENST00000636907 TMEM161AQ9NX61 479 aa17.82■□□□□ 0.44
CLN3-252ENST00000636907 WDR35Q9P2L0 1181 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms