RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TMEM92Q6UXU6 159 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 DSTYKQ6XUX3 929 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 TTC16Q8NEE8 873 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 ZNF462Q96JM2 2506 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 LARP6Q9BRS8 491 aaKnown RBP15.81■□□□□ 0.12
CLN3-249ENST00000636685 TARS2Q9BW92 718 aaKnown RBP15.81■□□□□ 0.12
CLN3-249ENST00000636685 KIF9Q9HAQ2 790 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 DUS2Q9NX74 493 aaKnown RBP15.81■□□□□ 0.12
CLN3-249ENST00000636685 MMP17Q9ULZ9 603 aa15.81■□□□□ 0.12
CLN3-249ENST00000636685 K7EQS6 105 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 WNT7AO00755 349 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 ABLIM1O14639 778 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 MCF2P10911 925 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 PLA2G2AP14555 144 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 AARSP49588 968 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLN3-249ENST00000636685 STK3Q13188 491 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 NR5A1Q13285 461 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 TOB2Q14106 344 aaPredicted RBP15.8■□□□□ 0.12
CLN3-249ENST00000636685 MTF1Q14872 753 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 DUOXA1Q1HG43 343 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 ARMCX5Q6P1M9 558 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 ZBTB45Q96K62 511 aaPredicted RBP15.8■□□□□ 0.12
CLN3-249ENST00000636685 SPACA7Q96KW9 195 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 TCHPQ9BT92 498 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 MRPL4Q9BYD3 311 aaKnown RBP15.8■□□□□ 0.12
CLN3-249ENST00000636685 CAPN10Q9HC96 672 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 TUFT1Q9NNX1 390 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 HSFX1Q9UBD0 423 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 ZMYM5Q9UJ78 669 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 WNT6Q9Y6F9 365 aa15.8■□□□□ 0.12
CLN3-249ENST00000636685 PHLPP2Q6ZVD8 1323 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 F11P03951 625 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 PROZP22891 400 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 DPP6P42658 865 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 TUFMP49411 452 aaKnown RBP15.79■□□□□ 0.12
CLN3-249ENST00000636685 GUCY2FP51841 1108 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 NLRP12P59046 1061 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 MAP7D1Q3KQU3 841 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 SLC39A12Q504Y0 691 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 TAS1R3Q7RTX0 852 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 DEFB119Q8N690 84 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 OR10T2Q8NGX3 314 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 OSCP1Q8WVF1 389 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 UBL7Q96S82 380 aaPredicted RBP15.79■□□□□ 0.12
CLN3-249ENST00000636685 PCDHB9Q9Y5E1 797 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 CFAP46Q8IYW2 2715 aa15.79■□□□□ 0.12
CLN3-249ENST00000636685 CCDC169A6NNP5 214 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 NEMFO60524 1076 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 ALDH1A2O94788 518 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 SERPINF2P08697 491 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 TYMPP19971 482 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 DDX6P26196 483 aaKnown RBP eCLIP15.78■□□□□ 0.12
CLN3-249ENST00000636685 LRPAP1P30533 357 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 IFNAR2P48551 515 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 DMP1Q13316 513 aaPredicted RBP15.78■□□□□ 0.12
CLN3-249ENST00000636685 ZNF268Q14587 947 aaPredicted RBP15.78■□□□□ 0.12
CLN3-249ENST00000636685 EML3Q32P44 896 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 MPZL3Q6UWV2 235 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 MON1AQ86VX9 555 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 STKLD1Q8NE28 680 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 CCDC26Q8TAB7 109 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 CEP76Q8TAP6 659 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 WHAMMQ8TF30 809 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 SLC39A7Q92504 469 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 ATP2A3Q93084 1043 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 MTMR9Q96QG7 549 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 MYOFQ9NZM1 2061 aa15.78■□□□□ 0.12
CLN3-249ENST00000636685 ANAPC1Q9H1A4 1944 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 ARHGAP33O14559 1287 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 PPEF2O14830 753 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 HMGA1P17096 107 aaKnown RBP15.77■□□□□ 0.12
CLN3-249ENST00000636685 HOXD12P35452 270 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 OPRD1P41143 372 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 PEX3P56589 373 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 ZNF77Q15935 545 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 SPDYCQ5MJ68 293 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 LARP1BQ659C4 914 aaKnown RBP15.77■□□□□ 0.12
CLN3-249ENST00000636685 LMBRD2Q68DH5 695 aaPredicted RBP15.77■□□□□ 0.12
CLN3-249ENST00000636685 CPLX2Q6PUV4 134 aaKnown RBP15.77■□□□□ 0.12
CLN3-249ENST00000636685 SLCO6A1Q86UG4 719 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 MARCH9Q86YJ5 346 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 KIFAP3Q92845 792 aa15.77■□□□□ 0.12
CLN3-249ENST00000636685 DNAAF2Q9NVR5 837 aaKnown RBP15.77■□□□□ 0.12
CLN3-249ENST00000636685 BCCIPQ9P287 314 aaKnown RBP eCLIP15.77■□□□□ 0.12
CLN3-249ENST00000636685 SCN1AP35498 2009 aa15.77■□□□□ 0.11
CLN3-249ENST00000636685 MYO18BQ8IUG5 2567 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 CXCL8P10145 99 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 NPTX2P47972 431 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 CYP4F3Q08477 520 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 NBR1Q14596 966 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 TOGARAM2Q6ZUX3 1019 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 NAXDQ8IW45 347 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 SFTPA1Q8IWL2 248 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 EFCAB13Q8IY85 973 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 ALLCQ8N6M5 410 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 TXNDC5Q8NBS9 432 aaKnown RBP15.76■□□□□ 0.11
CLN3-249ENST00000636685 HMGB4Q8WW32 186 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 MRPS31Q92665 395 aaKnown RBP15.76■□□□□ 0.11
CLN3-249ENST00000636685 TNFRSF25Q93038 417 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 SENP8Q96LD8 212 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms