RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CASP5P51878 434 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 RPL10AP62906 217 aaKnown RBP19.81■□□□□ 0.76
CLN3-241ENST00000635861 CYP4F8P98187 520 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 ITPRIPL2Q3MIP1 535 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 FAM173BQ6P4H8 233 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 DPH6Q7L8W6 267 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 GPD1LQ8N335 351 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 PDCL2Q8N4E4 241 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 TOP6BLQ8N6T0 577 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 LRRC3BQ96PB8 259 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 GMEB2Q9UKD1 530 aa19.81■□□□□ 0.76
CLN3-241ENST00000635861 F11P03951 625 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 TMEM191BP0C7N4 346 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 PDIA4P13667 645 aaKnown RBP19.8■□□□□ 0.76
CLN3-241ENST00000635861 HMGA1P17096 107 aaKnown RBP19.8■□□□□ 0.76
CLN3-241ENST00000635861 AVPR1AP37288 418 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 LHX1P48742 406 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 NLRP12P59046 1061 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 RBP5P82980 135 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 INTS6LQ5JSJ4 861 aaKnown RBP19.8■□□□□ 0.76
CLN3-241ENST00000635861 DGLUCYQ7Z3D6 616 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 CSGALNACT2Q8N6G5 542 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 CXorf38Q8TB03 319 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 GIPC2Q8TF65 315 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 TRMT2BQ96GJ1 504 aaKnown RBP19.8■□□□□ 0.76
CLN3-241ENST00000635861 FUBP3Q96I24 572 aaKnown RBP eCLIP19.8■□□□□ 0.76
CLN3-241ENST00000635861 SLC46A2Q9BY10 475 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 DDX43Q9NXZ2 648 aaKnown RBP19.8■□□□□ 0.76
CLN3-241ENST00000635861 GTSE1Q9NYZ3 720 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 L1RE1Q9UN81 338 aa19.8■□□□□ 0.76
CLN3-241ENST00000635861 R3HCC1Q9Y3T6 440 aaKnown RBP19.8■□□□□ 0.76
CLN3-241ENST00000635861 A0A087X0B3 334 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 PRR5-ARHGAP8B1AHC4 643 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 K7ELQ4 463 aaPredicted RBP19.79■□□□□ 0.76
CLN3-241ENST00000635861 PPP6R2O75170 966 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 PRPF40AO75400 957 aaKnown RBP19.79■□□□□ 0.76
CLN3-241ENST00000635861 PCSK1P29120 753 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 HOXA6P31267 233 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 WNT7BP56706 349 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 ARHGAP8P85298 464 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 AMPD3Q01432 767 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 LMNB2Q03252 620 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 CCINQ13939 588 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 ZNF268Q14587 947 aaPredicted RBP19.79■□□□□ 0.76
CLN3-241ENST00000635861 STK38Q15208 465 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 CFAP221Q4G0U5 840 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 LAIR1Q6GTX8 287 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 LINC00301Q8NCQ3 95 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 MRPS31Q92665 395 aaKnown RBP19.79■□□□□ 0.76
CLN3-241ENST00000635861 ANKRD36BP1Q96IX9 119 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 CBWD1Q9BRT8 395 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 KIAA1586Q9HCI6 787 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 ATG2BQ96BY7 2078 aa19.79■□□□□ 0.76
CLN3-241ENST00000635861 LRP3O75074 770 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 SOX9P48436 509 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 AMPD2Q01433 879 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 SATB1Q01826 763 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 MYO1EQ12965 1108 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 GAS6Q14393 721 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 TXNDC11Q6PKC3 985 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 TMEM150AQ86TG1 271 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 ZFYVE19Q96K21 471 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 MYRFLQ96LU7 910 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 CEP295NLQ96MC4 621 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 FAM83CQ9BQN1 747 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 TDP1Q9NUW8 608 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 TMLHEQ9NVH6 421 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 KBTBD4Q9NVX7 518 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 MYO16Q9Y6X6 1858 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 KIAA1549LQ6ZVL6 1849 aa19.78■□□□□ 0.76
CLN3-241ENST00000635861 ZNF233A6NK53 670 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 GABRDO14764 452 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 EIF3DO15371 548 aaKnown RBP eCLIP19.77■□□□□ 0.76
CLN3-241ENST00000635861 NOL4O94818 638 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 PRPF6O94906 941 aaKnown RBP19.77■□□□□ 0.76
CLN3-241ENST00000635861 BFSP1Q12934 665 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 CNNM4Q6P4Q7 775 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 MON1AQ86VX9 555 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 LONP2Q86WA8 852 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 PDILTQ8N807 584 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 ZSWIM2Q8NEG5 633 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 EXOC4Q96A65 974 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 ZNF396Q96N95 335 aaPredicted RBP19.77■□□□□ 0.76
CLN3-241ENST00000635861 PKMYT1Q99640 499 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 PI4K2AQ9BTU6 479 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 PANK2Q9BZ23 570 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 PDE11AQ9HCR9 933 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 INTS13Q9NVM9 706 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 SNX9Q9Y5X1 595 aa19.77■□□□□ 0.76
CLN3-241ENST00000635861 GOLGA8IPA6NC78 632 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 GOLGA8JA6NMD2 632 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 SPTLC2O15270 562 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 YEATS4O95619 227 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 KRT19P08727 400 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 SNRPFP62306 86 aaKnown RBP19.76■□□□□ 0.75
CLN3-241ENST00000635861 PON2Q15165 354 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 E2F4Q16254 413 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 GPIHBP1Q8IV16 184 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 ADGRF2Q8IZF7 708 aa19.76■□□□□ 0.75
CLN3-241ENST00000635861 MAB21L3Q8N8X9 362 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms