RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CXorf38Q8TB03 319 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SELENOSQ9BQE4 189 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 TSPYL1Q9H0U9 437 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 METTL5Q9NRN9 209 aaKnown RBP11.22□□□□□ -0.61
CUX1-221ENST00000622516 CTNNAL1Q9UBT7 734 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SLC12A6Q9UHW9 1150 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PLXNA1Q9UIW2 1896 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 M0QYV0 167 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 HCRTO43612 131 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 GAS8O95995 478 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 IFNB1P01574 187 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 EIF4BP23588 611 aaKnown RBP11.22□□□□□ -0.61
CUX1-221ENST00000622516 ACVR2BQ13705 512 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 TMEM132DQ14C87 1099 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PTGISQ16647 500 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 CAPN12Q6ZSI9 719 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 KIF12Q96FN5 646 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SNF8Q96H20 258 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PIWIL1Q96J94 861 aaKnown RBP11.22□□□□□ -0.61
CUX1-221ENST00000622516 C9orf72Q96LT7 481 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 OSMRQ99650 979 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 EIF2AQ9BY44 585 aaKnown RBP11.22□□□□□ -0.61
CUX1-221ENST00000622516 VTA1Q9NP79 307 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SNTG2Q9NY99 539 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 PARP2Q9UGN5 583 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 ANAPC5Q9UJX4 755 aa11.22□□□□□ -0.61
CUX1-221ENST00000622516 SCN1AP35498 2009 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 MAGEB2O15479 319 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 RGS16O15492 202 aaPredicted RBP11.21□□□□□ -0.61
CUX1-221ENST00000622516 MICAL2O94851 1124 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 CELF2O95319 508 aaKnown RBP11.21□□□□□ -0.61
CUX1-221ENST00000622516 NPTXRO95502 500 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 MMP3P08254 477 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 RARGP13631 454 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 RGS7P49802 495 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 NDST1P52848 882 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 NRLP54845 237 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 PTPN11Q06124 597 aaPredicted RBP11.21□□□□□ -0.61
CUX1-221ENST00000622516 P3H1Q32P28 736 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 PPP1R15BQ5SWA1 713 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 LINC01465Q8N7H1 131 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 ZMAT2Q96NC0 199 aaKnown RBP11.21□□□□□ -0.61
CUX1-221ENST00000622516 ACAP3Q96P50 834 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 CCT8L2Q96SF2 557 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 TINF2Q9BSI4 451 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 TMEM121Q9BTD3 319 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 DPP3Q9NY33 737 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 TBK1Q9UHD2 729 aa11.21□□□□□ -0.61
CUX1-221ENST00000622516 MYO1CO00159 1063 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 TULP2O00295 520 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 IL18RAPO95256 599 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 LSM8O95777 96 aaKnown RBP11.21□□□□□ -0.62
CUX1-221ENST00000622516 NUDT17P0C025 328 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 CREB1P16220 341 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 AKAP5P24588 427 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 GTF2A2P52657 109 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 ZNF200P98182 395 aaPredicted RBP11.21□□□□□ -0.62
CUX1-221ENST00000622516 CDO1Q16878 200 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 C3orf20Q8ND61 904 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 TMEM176AQ96HP8 235 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 ADAM33Q9BZ11 813 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 EPN3Q9H201 632 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 PCDHGC3Q9UN70 934 aa11.21□□□□□ -0.62
CUX1-221ENST00000622516 IQCA1LA6NCM1 817 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 GOLGA8MH3BSY2 632 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 EBAG9O00559 213 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 CILPO75339 1184 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 LRCH4O75427 683 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 MCF2P10911 925 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 PTK6Q13882 451 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 CCNG2Q16589 344 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 IZUMO3Q5VZ72 239 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 SPOCD1Q6ZMY3 1216 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 NLRP14Q86W24 1093 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 C18orf25Q96B23 403 aaPredicted RBP11.2□□□□□ -0.62
CUX1-221ENST00000622516 BCO2Q9BYV7 579 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 MLXIPLQ9NP71 852 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 FAM49BQ9NUQ9 324 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 KLK14Q9P0G3 267 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 A0A1B0GUA9 196 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 RASGRF2O14827 1237 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 ITIH2P19823 946 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 CYP3A5P20815 502 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 EIF3BP55884 814 aaKnown RBP11.2□□□□□ -0.62
CUX1-221ENST00000622516 YWHAEP62258 255 aaKnown RBP11.2□□□□□ -0.62
CUX1-221ENST00000622516 BYSLQ13895 437 aaKnown RBP11.2□□□□□ -0.62
CUX1-221ENST00000622516 HIC1Q14526 733 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 SLMAPQ14BN4 828 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 DUSP28Q4G0W2 176 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 SYCP2LQ5T4T6 812 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 AGBL2Q5U5Z8 902 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 CYP4F22Q6NT55 531 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 RHBDF2Q6PJF5 856 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 PNMA8AQ86V59 439 aaPredicted RBP11.2□□□□□ -0.62
CUX1-221ENST00000622516 RCOR2Q8IZ40 523 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 HSPH1Q92598 858 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 GBA2Q9HCG7 927 aaPredicted RBP11.2□□□□□ -0.62
CUX1-221ENST00000622516 WHRNQ9P202 907 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 SNX9Q9Y5X1 595 aa11.2□□□□□ -0.62
CUX1-221ENST00000622516 PLXNB2O15031 1838 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms