RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SEPT7Q16181 437 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 BBS9Q3SYG4 887 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 PTPN20Q4JDL3 420 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 FAM160B1Q5W0V3 765 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 PPP1R21Q6ZMI0 780 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 CENPUQ71F23 418 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 ZC3H18Q86VM9 953 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 RFX6Q8HWS3 928 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 ZBTB8OSQ8IWT0 167 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 SEPT1Q8WYJ6 367 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 COPS5Q92905 334 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 MAGEB18Q96M61 343 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 NIFKQ9BYG3 293 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 METTL5Q9NRN9 209 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 GINM1Q9NU53 330 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 SOWAHBA6NEL2 793 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 ATG7O95352 703 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 ARIH2O95376 493 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 GCAP28676 217 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 ABCD1P33897 745 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 VCPP55072 806 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 COPS2P61201 443 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 MGAT5Q09328 741 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 CDO1Q16878 200 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 EEF1DP3Q658K8 133 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 KIAA0319LQ8IZA0 1049 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 FAM71DQ8N9W8 422 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 UBA3Q8TBC4 463 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 PYROXD1Q8WU10 500 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 MAML1Q92585 1016 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 ACO2Q99798 780 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 CYTH4Q9UIA0 394 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 OGTO15294 1046 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 MGRN1O60291 552 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 TNNC2P02585 160 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 KRT4P19013 534 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 PIGHQ14442 188 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 C3orf62Q6ZUJ4 267 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 GIMAP7Q8NHV1 300 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 HMGXB4Q9UGU5 601 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 MAFO75444 373 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 PIGRP01833 764 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 KRT16P08779 473 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 EZRP15311 586 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 NQO1P15559 274 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 RFC5P40937 340 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 ZNF132P52740 706 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 HIF1AQ16665 826 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 MSS51Q4VC12 460 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 FNBP1LQ5T0N5 605 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 HHATQ5VTY9 493 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 TRABD2AQ86V40 505 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 VSIG1Q86XK7 387 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 ECHDC2Q86YB7 292 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 KIRREL3Q8IZU9 778 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 CPXM1Q96SM3 734 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 TMEM134Q9H6X4 195 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 ZNF112Q9UJU3 913 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 GRID1Q9ULK0 1009 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 PHTF1Q9UMS5 762 aa13.6□□□□□ -0.23
CCDC88A-214ENST00000621814 MYH9P35579 1960 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 TCRBV7S3A2A0A539 114 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ITGBL1O95965 494 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 OAS1P00973 400 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 SLC1A5Q15758 541 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ACCSLQ4AC99 568 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 RNASEH2BQ5TBB1 312 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 SH3PXD2AQ5TCZ1 1133 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ZNF449Q6P9G9 518 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 PALM2Q8IXS6 379 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 DNERQ8NFT8 737 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ANKRD36BP1Q96IX9 119 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 TMEM237Q96Q45 408 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 TACO1Q9BSH4 297 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 MAK16Q9BXY0 300 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ETNK1Q9HBU6 452 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 CNTN6Q9UQ52 1028 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 LRCH4O75427 683 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ASPAP45381 313 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 MMRN1Q13201 1228 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 NEDD9Q14511 834 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 TARBP2Q15633 366 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 RAB6CQ53S08 254 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ATF7IP2Q5U623 682 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 NPNTQ6UXI9 565 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 ARFGAP1Q8N6T3 406 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 LRRC8CQ8TDW0 803 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 SPATA33Q96N06 139 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 RAB6CQ9H0N0 254 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 SMYD3Q9H7B4 428 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 LGALS13Q9UHV8 139 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 FER1L6Q2WGJ9 1857 aa13.59□□□□□ -0.23
CCDC88A-214ENST00000621814 TARSP26639 723 aaKnown RBP13.58□□□□□ -0.23
CCDC88A-214ENST00000621814 GBP2P32456 591 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-214ENST00000621814 OVGP1Q12889 678 aa13.58□□□□□ -0.23
CCDC88A-214ENST00000621814 VGLL4Q14135 290 aa13.58□□□□□ -0.23
CCDC88A-214ENST00000621814 MTFR1Q15390 333 aa13.58□□□□□ -0.23
CCDC88A-214ENST00000621814 ZPBP2Q6X784 338 aa13.58□□□□□ -0.23
CCDC88A-214ENST00000621814 UNC45BQ8IWX7 931 aa13.58□□□□□ -0.23
CCDC88A-214ENST00000621814 FBXO16Q8IX29 292 aaPredicted RBP13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms