RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 INO80Q9ULG1 1556 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 TNS2Q63HR2 1409 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 STX7O15400 261 aaKnown RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 MTSS1O43312 755 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 MED24O75448 989 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 POMCP01189 267 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 MYL2P10916 166 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 WEE1P30291 646 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 SREBF1P36956 1147 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 LHX1P48742 406 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 BTG3Q14201 252 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 HIST2H2ACQ16777 129 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-219ENST00000620786 HIST2H2AA3Q6FI13 130 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 NAPEPLDQ6IQ20 393 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 TLK2Q86UE8 772 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 FAM83AQ86UY5 434 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 DPF2Q92785 391 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 ADAM33Q9BZ11 813 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 OLFML3Q9NRN5 406 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 NEU2Q9Y3R4 380 aa11.87□□□□□ -0.51
CLIP1-219ENST00000620786 RNF103-CHMP3A0A140T963 221 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 PBLDP30039 288 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 GCKP35557 465 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 SOAT1P35610 550 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 SERPINB9P50453 376 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 ACSF2Q96CM8 615 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 CDCA5Q96FF9 252 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 TRIM51Q9BSJ1 452 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 ZCWPW1Q9H0M4 648 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 RNF208Q9H0X6 261 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 TRABDQ9H4I3 376 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 KANSL3Q9P2N6 904 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 SCOCQ9UIL1 159 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 TRAF3IP3Q9Y228 551 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 SNX5Q9Y5X3 404 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 NCOA3Q9Y6Q9 1424 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 A0A1B0GTH6 734 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 H2AFYO75367 372 aaKnown RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 ATP5HO75947 161 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 COMTP21964 271 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 KLK7P49862 253 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 AMPD2Q01433 879 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 SGO1Q5FBB7 561 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 AGPAT5Q9NUQ2 364 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 PCMTD2Q9NV79 361 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 FBXL21Q9UKT6 434 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 CHMP2BQ9UQN3 213 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 RRP15Q9Y3B9 282 aaKnown RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 CEMIPQ8WUJ3 1361 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 SLC12A8A0AV02 714 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 C2orf81A6NN90 581 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 H3BRB1 525 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 FOXP2O15409 715 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 CST8O60676 142 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 NPTX2P47972 431 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 RAB27AP51159 221 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 MTF1Q14872 753 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 MTFR1Q15390 333 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 BLOC1S5Q8TDH9 187 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 NFKBIZQ9BYH8 718 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 TUT1Q9H6E5 874 aaKnown RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 CAPN10Q9HC96 672 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 THG1LQ9NWX6 298 aaKnown RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 C6orf203Q9P0P8 240 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 ANXA9O76027 345 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 VDRP11473 427 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 VCLP18206 1134 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 PTGER2P43116 358 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 NUMBP49757 651 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 ALDH18A1P54886 795 aaKnown RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 ZNF200P98182 395 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 LAMTOR4Q0VGL1 99 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 PGM5Q15124 567 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 Q4G0T1 1027 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 KLHDC7AQ5VTJ3 777 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 RBM15Q96T37 977 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 FHDC1Q9C0D6 1143 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-219ENST00000620786 VPS33BQ9H267 617 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 PSD3Q9NYI0 1048 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 SLC39A10Q9ULF5 831 aa11.86□□□□□ -0.51
CLIP1-219ENST00000620786 EFCAB14O75071 495 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 PMPCBO75439 489 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 PHKG1Q16816 387 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 LINC00523Q86TU6 105 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 CGRRF1Q99675 332 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 OSBPL8Q9BZF1 889 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 CCDC90BQ9GZT6 254 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 VPS28Q9UK41 221 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 ZNF185O15231 689 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 ENDOD1O94919 500 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 SPRP35270 261 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 DCCP43146 1447 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 GEMP55040 296 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 HPCAP84074 193 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 UGT3A1Q6NUS8 523 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 MYPNQ86TC9 1320 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 FAM71DQ8N9W8 422 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 CIPCQ9C0C6 399 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 AK9Q5TCS8 1911 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms