RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 A0A087X0B3 334 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 H0Y858 1186 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 FANCGO15287 622 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 CDH15P55291 814 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 CENPCQ03188 943 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 TFDP1Q14186 410 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 MTX3Q5HYI7 312 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 TTC39BQ5VTQ0 682 aaPredicted RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 E2F7Q96AV8 911 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 OSGEPQ9NPF4 335 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 FLT1P17948 1338 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 ZC3H4Q9UPT8 1303 aaKnown RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 NMT1P30419 496 aaKnown RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 PTPAQ15257 358 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 SERPINB12Q96P63 405 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 CSRNP1Q96S65 589 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 PRKAB1Q9Y478 270 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 O00370 1275 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 KCNN4O15554 427 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 PROCP04070 461 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 VARSP26640 1264 aaKnown RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 MCAMP43121 646 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 GLRBP48167 497 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 RPL10AP62906 217 aaKnown RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 GALNT6Q8NCL4 622 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 C7orf57Q8NEG2 295 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 TOP2BQ02880 1626 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 PBRM1Q86U86 1689 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 MRC2Q9UBG0 1479 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 ZBED1O96006 694 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 TKTP29401 623 aaKnown RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 TYK2P29597 1187 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 KRT73Q86Y46 540 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 PLBD2Q8NHP8 589 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 CMTM5Q96DZ9 223 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 ITM2CQ9NQX7 267 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 TESPA1A2RU30 521 aaPredicted RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 CBFA2T3O75081 653 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 SGPL1O95470 568 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 NPTXRO95502 500 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 ASLP04424 464 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 BMP3P12645 472 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 ABATP80404 500 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 C12orf60Q5U649 245 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 CHADLQ6NUI6 762 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 PPP1R18Q6NYC8 613 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 LUZP2Q86TE4 346 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 BPIFB6Q8NFQ5 453 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 ANKRD36BP1Q96IX9 119 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 NEUROG2Q9H2A3 272 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 TUFT1Q9NNX1 390 aa5.25□□□□□ -1.57
VPS13D-214ENST00000620676 BARX2Q9UMQ3 279 aaPredicted RBP5.25□□□□□ -1.57
VPS13D-214ENST00000620676 PLB1Q6P1J6 1458 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 NRP2O60462 931 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 GJB6O95452 261 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 NADKO95544 446 aaPredicted RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 ERCC2P18074 760 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 SCARF1Q14162 830 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 WDR59Q6PJI9 974 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 PCDHA6Q9UN73 950 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 PCDHA8Q9Y5H6 950 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 A8MU76 341 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 ITGA2BP08514 1039 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 MARCKSL1P49006 195 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 GTF2IP78347 998 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 CTC1Q2NKJ3 1217 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 AKAP4Q5JQC9 854 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 ZNF668Q96K58 619 aaPredicted RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 NOL11Q9H8H0 719 aaKnown RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 PCDHA1Q9Y5I3 950 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 GRK3P35626 688 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 EFR3AQ14156 821 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 CYP4V2Q6ZWL3 525 aaPredicted RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 PAGE2Q7Z2X7 111 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 POLNQ7Z5Q5 900 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 CPXCR1Q8N123 301 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 PCDH20Q8N6Y1 951 aaKnown RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 KCNK16Q96T55 309 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 C1orf50Q9BV19 199 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 CCSER2Q9H7U1 834 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 KCND1Q9NSA2 647 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 PDS5AQ29RF7 1337 aaKnown RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 KDM5CP41229 1560 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 SNTNA6NMZ2 147 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 MAP3K6O95382 1288 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 ZSCAN5DPP0CG00 497 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 UCHL3P15374 230 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 BNIP1Q12981 228 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 CES3Q6UWW8 571 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 HDDC2Q7Z4H3 204 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 SNX32Q86XE0 403 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 RBM12BQ8IXT5 1001 aaKnown RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 ULK2Q8IYT8 1036 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 DEPDC4Q8N2C3 294 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 SH3RF3Q8TEJ3 882 aaPredicted RBP5.24□□□□□ -1.57
VPS13D-214ENST00000620676 KCTD4Q8WVF5 259 aa5.24□□□□□ -1.57
VPS13D-214ENST00000620676 RSPH1Q8WYR4 309 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms