RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 ULK4Q96C45 1275 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 MTMR9Q96QG7 549 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 RBM12Q9NTZ6 932 aaKnown RBP10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.62□□□□□ -0.719e-9■■■□□ 15.7
SMARCA1-205ENST00000617310 GTF3C4Q9UKN8 822 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 CHMP2BQ9UQN3 213 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 NFAT5O94916 1531 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 MON2Q7Z3U7 1717 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 KPNA6O60684 536 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 SPAG7O75391 227 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 MX2P20592 715 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 ACADSBP45954 432 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 TKTL1P51854 596 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 VSNL1P62760 191 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 MAPRE1Q15691 268 aaKnown RBP10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 FASTKD1Q53R41 847 aaKnown RBP10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 SPRYD7Q5W111 196 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 APBA2Q99767 749 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 PCDHB12Q9Y5F1 795 aa10.62□□□□□ -0.71
SMARCA1-205ENST00000617310 TMEM253P0C7T8 217 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 ZFXP17010 805 aaPredicted RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 KLRC2P26717 231 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 GGCXP38435 758 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 NAA25Q14CX7 972 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 GIPC2Q8TF65 315 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 DDI1Q8WTU0 396 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 N4BP2L2Q92802 583 aaPredicted RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SLC35C1Q96A29 364 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 LATS2Q9NRM7 1088 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 DCTN4Q9UJW0 460 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 TSPAN16Q9UKR8 245 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 PPME1Q9Y570 386 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 FRMPD4Q14CM0 1322 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SNX2O60749 519 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 BRAFP15056 766 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SLC1A1P43005 524 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 KPNA2P52292 529 aaKnown RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 PMS2P54278 862 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SNX17Q15036 470 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 FAM172AQ8WUF8 416 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 PBXIP1Q96AQ6 731 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 CEP41Q9BYV8 373 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 TRPM5Q9NZQ8 1165 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 DIS3Q9Y2L1 958 aaKnown RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 TRPV2Q9Y5S1 764 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 UBIAD1Q9Y5Z9 338 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 CAPN6Q9Y6Q1 641 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 ITIH6Q6UXX5 1313 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 CHD2O14647 1828 aaKnown RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 HOXA2O43364 376 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 VDRP11473 427 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 GRK4P32298 578 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 BYSLQ13895 437 aaKnown RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 FAM110CQ1W6H9 321 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 NBPF20Q3BBV1 942 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 FAM133BQ5BKY9 247 aaKnown RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 TFAP2DQ7Z6R9 452 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 FBXL16Q8N461 479 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 HIPK4Q8NE63 616 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SLC2A14Q8TDB8 520 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 TMEM176AQ96HP8 235 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 NUF2Q9BZD4 464 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 KCNMB3Q9NPA1 279 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 CAPN7Q9Y6W3 813 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SYNDIG1LA6NDD5 238 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 F8VZ95 297 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 MUTP22033 750 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SNRPFP62306 86 aaKnown RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 DLG4P78352 724 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 CBWD6Q4V339 395 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 TMEM119Q4V9L6 283 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 CBWD3Q5JTY5 395 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 CBWD5Q5RIA9 395 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 ACAD10Q6JQN1 1059 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 C1orf186Q6ZWK4 172 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 ZNF571Q7Z3V5 609 aaPredicted RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 WDR49Q8IV35 697 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 ARHGEF19Q8IW93 802 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 SCUBE3Q8IX30 993 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 RCOR2Q8IZ40 523 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 RXFP2Q8WXD0 754 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 RBM15Q96T37 977 aaKnown RBP eCLIP10.61□□□□□ -0.711e-6■□□□□ 9.5
SMARCA1-205ENST00000617310 DDX50Q9BQ39 737 aaKnown RBP10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 AIPL1Q9NZN9 384 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 BAG5Q9UL15 447 aa10.61□□□□□ -0.71
SMARCA1-205ENST00000617310 NFE2Q16621 373 aaPredicted RBP10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 TTC23LQ6PF05 361 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 NIPA1Q7RTP0 329 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 NOA1Q8NC60 698 aaKnown RBP10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 ZNF606Q8WXB4 792 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 SNF8Q96H20 258 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 PPP1R36Q96LQ0 422 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 DUSP9Q99956 384 aaKnown RBP10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 ELAC2Q9BQ52 826 aaKnown RBP10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 BDNFP23560 247 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 TNFSF9P41273 254 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 BCAT1P54687 386 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 SLC12A3P55017 1021 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 FKBP1BP68106 108 aa10.6□□□□□ -0.71
SMARCA1-205ENST00000617310 ADIGQ0VDE8 80 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms