RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SDHBP21912 280 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 PNPLA4P41247 253 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 KCNA1Q09470 495 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 BRSK2Q8IWQ3 736 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 CCDC65Q8IXS2 484 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 CELF5Q8N6W0 485 aaKnown RBP20.4■□□□□ 0.86
CDX1-202ENST00000616154 ACCSQ96QU6 501 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 FGFBP2Q9BYJ0 223 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 RBM12Q9NTZ6 932 aaKnown RBP20.4■□□□□ 0.86
CDX1-202ENST00000616154 ABI2Q9NYB9 513 aaPredicted RBP20.4■□□□□ 0.86
CDX1-202ENST00000616154 GMEB2Q9UKD1 530 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 RAB23Q9ULC3 237 aa20.4■□□□□ 0.86
CDX1-202ENST00000616154 TGM1P22735 817 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 ME1P48163 572 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 CDR1P51861 262 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 WNT7BP56706 349 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 AMPD3Q01432 767 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 LMNB2Q03252 620 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 EHHADHQ08426 723 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 TAF12Q16514 161 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 GIPC2Q8TF65 315 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 DHX58Q96C10 678 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 C7orf25Q9BPX7 421 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 FAM213AQ9BRX8 229 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 SLC46A2Q9BY10 475 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 PCDHB5Q9Y5E4 795 aa20.39■□□□□ 0.85
CDX1-202ENST00000616154 PRR5-ARHGAP8B1AHC4 643 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 GCNT3O95395 438 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 GARTP22102 1010 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 ARHGAP8P85298 464 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 TFAMQ00059 246 aaKnown RBP20.38■□□□□ 0.85
CDX1-202ENST00000616154 TSPY1Q01534 308 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 NFE2Q16621 373 aaPredicted RBP20.38■□□□□ 0.85
CDX1-202ENST00000616154 FOXD4L6Q3SYB3 417 aaPredicted RBP20.38■□□□□ 0.85
CDX1-202ENST00000616154 LAIR1Q6GTX8 287 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 FOXD4L3Q6VB84 417 aaPredicted RBP20.38■□□□□ 0.85
CDX1-202ENST00000616154 CLEC17AQ6ZS10 378 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 Q6ZS52 159 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 TMEM150AQ86TG1 271 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 TTC8Q8TAM2 541 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 THG1LQ9NWX6 298 aaKnown RBP20.38■□□□□ 0.85
CDX1-202ENST00000616154 TBC1D7Q9P0N9 293 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 RALGAPA1Q6GYQ0 2036 aa20.38■□□□□ 0.85
CDX1-202ENST00000616154 SPTBN2O15020 2390 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 K7ESF4 209 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 LDHAP00338 332 aaKnown RBP20.37■□□□□ 0.85
CDX1-202ENST00000616154 HMGA1P17096 107 aaKnown RBP20.37■□□□□ 0.85
CDX1-202ENST00000616154 DDX6P26196 483 aaKnown RBP eCLIP20.37■□□□□ 0.85
CDX1-202ENST00000616154 POLR2BP30876 1174 aaKnown RBP20.37■□□□□ 0.85
CDX1-202ENST00000616154 NLRP12P59046 1061 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 TNK2Q07912 1038 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 CCINQ13939 588 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 PON2Q15165 354 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 ITPRIPL2Q3MIP1 535 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 CMTM8Q8IZV2 173 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 SYNPOQ8N3V7 929 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 PDCL2Q8N4E4 241 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 C1orf127Q8N9H9 656 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 ZSWIM2Q8NEG5 633 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 CACTINQ8WUQ7 758 aaKnown RBP20.37■□□□□ 0.85
CDX1-202ENST00000616154 LEO1Q8WVC0 666 aaPredicted RBP20.37■□□□□ 0.85
CDX1-202ENST00000616154 SAAL1Q96ER3 474 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 SMG9Q9H0W8 520 aaKnown RBP20.37■□□□□ 0.85
CDX1-202ENST00000616154 TMEM206Q9H813 350 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 PARD6AQ9NPB6 346 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 TMLHEQ9NVH6 421 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 FAM13BQ9NYF5 915 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 RBAKQ9NYW8 714 aaPredicted RBP20.37■□□□□ 0.85
CDX1-202ENST00000616154 USP18Q9UMW8 372 aa20.37■□□□□ 0.85
CDX1-202ENST00000616154 SOBPA7XYQ1 873 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 CHURC1-FNTBB4DL54 471 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 EIF3DO15371 548 aaKnown RBP eCLIP20.36■□□□□ 0.85
CDX1-202ENST00000616154 POLR2DO15514 142 aaKnown RBP20.36■□□□□ 0.85
CDX1-202ENST00000616154 F11P03951 625 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 ITGB3P05106 788 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 FNTBP49356 437 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 DMWDQ09019 674 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 EPM2AIP1Q7L775 607 aaPredicted RBP20.36■□□□□ 0.85
CDX1-202ENST00000616154 LONP2Q86WA8 852 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 LRRC52Q8N7C0 313 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 CXorf38Q8TB03 319 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 ACBD6Q9BR61 282 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 L1RE1Q9UN81 338 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 AGAP1Q9UPQ3 857 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 ATP6V1DQ9Y5K8 247 aa20.36■□□□□ 0.85
CDX1-202ENST00000616154 KIAA0391O15091 583 aaKnown RBP20.35■□□□□ 0.85
CDX1-202ENST00000616154 CNR2P34972 360 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 AVPR1AP37288 418 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 LPAL2Q16609 132 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 PRR23BQ6ZRT6 265 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 STXBP4Q6ZWJ1 553 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 UNC13DQ70J99 1090 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 SYCP3Q8IZU3 236 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 TMEM86AQ8N2M4 240 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 SPATA18Q8TC71 538 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 FAM83CQ9BQN1 747 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 PI4K2AQ9BTU6 479 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 KIF9Q9HAQ2 790 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 ABCB6Q9NP58 842 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 ITGA11Q9UKX5 1188 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms