RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SLC5A5Q92911 643 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 SLC39A10Q9ULF5 831 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 LOC102724159A0A0B4J2E5 919 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 FAM153BP0C7A2 387 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 CYP2C9P11712 490 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 VEGFAP15692 232 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-212ENST00000616140 MUTP22033 750 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 GARTP22102 1010 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 SCTRP47872 440 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 PWP2Q15269 919 aaKnown RBP14.61□□□□□ -0.07
CPSF1-212ENST00000616140 FAM153CQ494X1 144 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 ACCSLQ4AC99 568 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 GRAMD4Q6IC98 578 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 C16orf87Q6PH81 154 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 NUP93Q8N1F7 819 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 ASPSCR1Q9BZE9 553 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-212ENST00000616140 WHRNQ9P202 907 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 FAM153AQ9UHL3 310 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 HAO1Q9UJM8 370 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 PRDM4Q9UKN5 801 aa14.61□□□□□ -0.07
CPSF1-212ENST00000616140 TMEM247A6NEH6 219 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ZNF189O75820 626 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-212ENST00000616140 PROSCO94903 275 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 EPHB2P29323 1055 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 CDC42EP1Q00587 391 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 GLRA4Q5JXX5 417 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 SH3RF1Q7Z6J0 888 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 CHST13Q8NET6 341 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ZKSCAN4Q969J2 545 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-212ENST00000616140 SGF29Q96ES7 293 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 TMX2Q9Y320 296 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 CDY2AQ9Y6F7 541 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 CDY1Q9Y6F8 540 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 RPS6KL1Q9Y6S9 549 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 SLIT1O75093 1534 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 TNPO2O14787 897 aaKnown RBP14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ESRRBO95718 433 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 HMBSP08397 361 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 SOX11P35716 441 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 DYNC1I2Q13409 638 aaKnown RBP14.6□□□□□ -0.07
CPSF1-212ENST00000616140 EFHC1Q5JVL4 640 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 TMEM154Q6P9G4 183 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 C3orf20Q8ND61 904 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 CATSPER1Q8NEC5 780 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ACTL9Q8TC94 416 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ELMO2Q96JJ3 720 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 RUBCNLQ9H714 662 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ACADSBP45954 432 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 CLCN3P51790 818 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 DCAF4L1Q3SXM0 396 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 CREG2Q8IUH2 290 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 EMC1Q8N766 993 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 TRIM54Q9BYV2 358 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 ZC3H11AO75152 810 aaKnown RBP eCLIP14.6□□□□□ -0.07
CPSF1-212ENST00000616140 DGKIO75912 1065 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 GNL1P36915 607 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-212ENST00000616140 KRT33BQ14525 404 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 MEA1Q16626 185 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 Q4G0T1 1027 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 TMC2Q8TDI7 906 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 PBXIP1Q96AQ6 731 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 DLGAP2Q9P1A6 1054 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 FRMPD1Q5SYB0 1578 aa14.6□□□□□ -0.07
CPSF1-212ENST00000616140 DDX3XO00571 662 aaKnown RBP eCLIP14.59□□□□□ -0.073e-17■■■■□ 26.6
CPSF1-212ENST00000616140 AKAP10O43572 662 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 TRADDQ15628 312 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 AMHR2Q16671 573 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 GANCQ8TET4 914 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 VPS33BQ9H267 617 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 CASS4Q9NQ75 786 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 A0A0U1RQJ8 604 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 NCAM1P13591 858 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 RARRES1P49788 294 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 PDAP1Q13442 181 aaKnown RBP14.59□□□□□ -0.07
CPSF1-212ENST00000616140 CNPY4Q8N129 248 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 GALNT4Q8N4A0 578 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 CCDC33Q8N5R6 958 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 PDCD2LQ9BRP1 358 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 EHD4Q9H223 541 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 INTS13Q9NVM9 706 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 DIP2BQ9P265 1576 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 FAM86B1E9PN63 330 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 ZBTB39O15060 712 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 UBOX5O94941 541 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 FAM86B2P0C5J1 330 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 SHMT1P34896 483 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 SOX10P56693 466 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 LAYNQ6UX15 382 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 TATDN2Q93075 761 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 MOSPD1Q9UJG1 213 aa14.59□□□□□ -0.07
CPSF1-212ENST00000616140 TRAPPC3O43617 180 aa14.58□□□□□ -0.07
CPSF1-212ENST00000616140 NQO1P15559 274 aaKnown RBP14.58□□□□□ -0.07
CPSF1-212ENST00000616140 PCSK1P29120 753 aa14.58□□□□□ -0.07
CPSF1-212ENST00000616140 NAMPTP43490 491 aa14.58□□□□□ -0.07
CPSF1-212ENST00000616140 CCNG2Q16589 344 aa14.58□□□□□ -0.07
CPSF1-212ENST00000616140 POTEAQ6S8J7 498 aa14.58□□□□□ -0.07
CPSF1-212ENST00000616140 DACH2Q96NX9 599 aa14.58□□□□□ -0.07
CPSF1-212ENST00000616140 WTIPA6NIX2 430 aaPredicted RBP14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms