RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	DMWD	Q09019	674 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	SMARCB1	Q12824	385 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	PUM1	Q14671	1186 aa	Known RBP eCLIP	18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	TXNDC8	Q6A555	127 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	FOXD4L3	Q6VB84	417 aa	Predicted RBP	18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	RALGPS2	Q86X27	583 aa	Predicted RBP	18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	NT5DC4	Q86YG4	428 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	SCN4B	Q8IWT1	228 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	CELF5	Q8N6W0	485 aa	Known RBP	18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	NELL1	Q92832	810 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	FAM126A	Q9BYI3	521 aa	Predicted RBP	18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	MTMR12	Q9C0I1	747 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	TRPC7	Q9HCX4	862 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	GTF3C4	Q9UKN8	822 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	FRYL	O94915	3013 aa		18.91	■□□□□ 0.62
SHKBP1-223	ENST00000600552	NUP210	Q8TEM1	1887 aa	Predicted RBP	18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	ATG2B	Q96BY7	2078 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	MYBPHL	A2RUH7	354 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	STX6	O43752	255 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	HOXC13	P31276	330 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	NLRP12	P59046	1061 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	RBP5	P82980	135 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	POU5F1	Q01860	360 aa	Known RBP	18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	SRSF5	Q13243	272 aa	Known RBP	18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	CCDC142	Q17RM4	750 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	ITPRIPL2	Q3MIP1	535 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	TRIM68	Q6AZZ1	485 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	OSTM1	Q86WC4	334 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	CMTM8	Q8IZV2	173 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	SPEM1	Q8N4L4	309 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	GLIS3	Q8NEA6	775 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	TMEM206	Q9H813	350 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	OLFML3	Q9NRN5	406 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	OBP2A	Q9NY56	170 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	CCL26	Q9Y258	94 aa		18.9	■□□□□ 0.62
SHKBP1-223	ENST00000600552	MED19	A0JLT2	244 aa	Predicted RBP	18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TDGF1	P13385	188 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PLCB2	Q00722	1185 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SPEM2	Q0P670	501 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ALCAM	Q13740	583 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SIM2	Q14190	667 aa	Predicted RBP	18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	NFE2	Q16621	373 aa	Predicted RBP	18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	WDR44	Q5JSH3	913 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DGKK	Q5KSL6	1271 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SPATA2L	Q8IUW3	424 aa	Predicted RBP	18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ADGRF2	Q8IZF7	708 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	GPD1L	Q8N335	351 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	RDH13	Q8NBN7	331 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	MRPS31	Q92665	395 aa	Known RBP	18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DHX58	Q96C10	678 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	MSANTD3	Q96H12	275 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ANKRD36BP1	Q96IX9	119 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	IER2	Q9BTL4	223 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	EBF3	Q9H4W6	596 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	C2orf42	Q9NWW7	574 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ITGA11	Q9UKX5	1188 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CEP250	Q9BV73	2442 aa		18.89	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TNNC2	P02585	160 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	F11	P03951	625 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CSH1	P0DML2	217 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CSH2	P0DML3	217 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	HMGA1	P17096	107 aa	Known RBP	18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	MLLT6	P55198	1093 aa	Predicted RBP	18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	RPL10A	P62906	217 aa	Known RBP	18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ASIC1	P78348	528 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	INTS6L	Q5JSJ4	861 aa	Known RBP	18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CC2D1A	Q6P1N0	951 aa	Predicted RBP	18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	C1orf228	Q6PIY5	440 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	STXBP4	Q6ZWJ1	553 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TMEM150A	Q86TG1	271 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	USP13	Q92995	863 aa	Predicted RBP	18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ACBD6	Q9BR61	282 aa		18.88	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SPTLC2	O15270	562 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ATP2C2	O75185	946 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PDGFRB	P09619	1106 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ARSA	P15289	507 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CEP68	Q76N32	757 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	CBWD2	Q8IUF1	395 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TMEM86A	Q8N2M4	240 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	LRRC52	Q8N7C0	313 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	OR5B17	Q8NGF7	314 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	INTS4	Q96HW7	963 aa	Known RBP	18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	HPDL	Q96IR7	371 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ZNF396	Q96N95	335 aa	Predicted RBP	18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	TDP1	Q9NUW8	608 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	SIX4	Q9UIU6	781 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	DMXL1	Q9Y485	3027 aa		18.87	■□□□□ 0.61
SHKBP1-223	ENST00000600552	FRMD3	A2A2Y4	597 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ZNF233	A6NK53	670 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552		K7ELQ4	463 aa	Predicted RBP	18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	HR	O43593	1189 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PXN	P49023	591 aa	Predicted RBP	18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	PSMC1	P62191	440 aa	Known RBP	18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	MYO1E	Q12965	1108 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	RUNX3	Q13761	415 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	MAMSTR	Q6ZN01	415 aa		18.86	■□□□□ 0.61
SHKBP1-223	ENST00000600552	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	18.86	■□□□□ 0.61

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