RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 GIPC2Q8TF65 315 aa16.97■□□□□ 0.31
VRK3-221ENST00000600284 HPDLQ96IR7 371 aa16.97■□□□□ 0.31
VRK3-221ENST00000600284 IER2Q9BTL4 223 aa16.97■□□□□ 0.31
VRK3-221ENST00000600284 BLZF1Q9H2G9 400 aa16.97■□□□□ 0.31
VRK3-221ENST00000600284 TMLHEQ9NVH6 421 aa16.97■□□□□ 0.31
VRK3-221ENST00000600284 SPATA6Q9NWH7 488 aaPredicted RBP16.97■□□□□ 0.31
VRK3-221ENST00000600284 TCHHQ07283 1943 aa16.97■□□□□ 0.31
VRK3-221ENST00000600284 FAM163BP0C2L3 166 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 CSH1P0DML2 217 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 CSH2P0DML3 217 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 DDX6P26196 483 aaKnown RBP eCLIP16.96■□□□□ 0.31
VRK3-221ENST00000600284 CFAP221Q4G0U5 840 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 ARHGAP29Q52LW3 1261 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 LMBRD2Q68DH5 695 aaPredicted RBP16.96■□□□□ 0.31
VRK3-221ENST00000600284 SCARA3Q6AZY7 606 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 TRAPPC11Q7Z392 1133 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 ADGRF2Q8IZF7 708 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 CSGALNACT1Q8TDX6 532 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 FAM3CQ92520 227 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 RSPRY1Q96DX4 576 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 FUBP3Q96I24 572 aaKnown RBP eCLIP16.96■□□□□ 0.31
VRK3-221ENST00000600284 FNBP1Q96RU3 617 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 PKMYT1Q99640 499 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 PI4K2AQ9BTU6 479 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 C8orf33Q9H7E9 229 aaPredicted RBP16.96■□□□□ 0.31
VRK3-221ENST00000600284 USP25Q9UHP3 1055 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 PIAS3Q9Y6X2 628 aa16.96■□□□□ 0.31
VRK3-221ENST00000600284 MIA3Q5JRA6 1907 aa16.96■□□□□ 0.3
VRK3-221ENST00000600284 NCANO14594 1321 aa16.96■□□□□ 0.3
VRK3-221ENST00000600284 PTPRJQ12913 1337 aa16.96■□□□□ 0.3
VRK3-221ENST00000600284 LMNAP02545 664 aaKnown RBP16.95■□□□□ 0.3
VRK3-221ENST00000600284 F11P03951 625 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 HMGA1P17096 107 aaKnown RBP16.95■□□□□ 0.3
VRK3-221ENST00000600284 CMA1P23946 247 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 AFMP43652 599 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 PLCB2Q00722 1185 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 PSMD2Q13200 908 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 CUL4BQ13620 913 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 PSMD6Q15008 389 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 KNOP1Q1ED39 458 aaKnown RBP16.95■□□□□ 0.3
VRK3-221ENST00000600284 FAM171BQ6P995 826 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 NELFCDQ8IXH7 590 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 RDH13Q8NBN7 331 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 SPRYD3Q8NCJ5 442 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 GOLGA5Q8TBA6 731 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 SLC39A2Q9NP94 309 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 UXTQ9UBK9 157 aaPredicted RBP16.95■□□□□ 0.3
VRK3-221ENST00000600284 GTF3C4Q9UKN8 822 aa16.95■□□□□ 0.3
VRK3-221ENST00000600284 CLIC2O15247 247 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 MYL1P05976 194 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 TNNI1P19237 187 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 ACAT1P24752 427 aaKnown RBP16.94■□□□□ 0.3
VRK3-221ENST00000600284 CASP1P29466 404 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 NLRP12P59046 1061 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 CYP4F8P98187 520 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 CYP24A1Q07973 514 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 MAPRE1Q15691 268 aaKnown RBP16.94■□□□□ 0.3
VRK3-221ENST00000600284 C4orf50Q6ZRC1 276 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 TMEM150AQ86TG1 271 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 OSTM1Q86WC4 334 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 SPATA2LQ8IUW3 424 aaPredicted RBP16.94■□□□□ 0.3
VRK3-221ENST00000600284 CMTM8Q8IZV2 173 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 ADSSL1Q8N142 457 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 CELF5Q8N6W0 485 aaKnown RBP16.94■□□□□ 0.3
VRK3-221ENST00000600284 BPIFB1Q8TDL5 484 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 TMEM174Q8WUU8 243 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 TRMT2BQ96GJ1 504 aaKnown RBP16.94■□□□□ 0.3
VRK3-221ENST00000600284 FAM84AQ96KN4 292 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 MYRFLQ96LU7 910 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 CEP295NLQ96MC4 621 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 CGRRF1Q99675 332 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 SLC46A2Q9BY10 475 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 THG1LQ9NWX6 298 aaKnown RBP16.94■□□□□ 0.3
VRK3-221ENST00000600284 SERTAD1Q9UHV2 236 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 CDH9Q9ULB4 789 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 R4GN57 208 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 COL4A3Q01955 1670 aa16.94■□□□□ 0.3
VRK3-221ENST00000600284 CACNA1IQ9P0X4 2223 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 ACTN4O43707 911 aaKnown RBP16.93■□□□□ 0.3
VRK3-221ENST00000600284 NOL4O94818 638 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 DLATP10515 647 aaKnown RBP16.93■□□□□ 0.3
VRK3-221ENST00000600284 WARSP23381 471 aaKnown RBP16.93■□□□□ 0.3
VRK3-221ENST00000600284 CYP2F1P24903 491 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 MAGEA11P43364 429 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 CYP2J2P51589 502 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 CDR1P51861 262 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 DDR2Q16832 855 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 RALGPS2Q86X27 583 aaPredicted RBP16.93■□□□□ 0.3
VRK3-221ENST00000600284 KBTBD7Q8WVZ9 684 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 PAGE5Q96GU1 130 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 LRRC3BQ96PB8 259 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 FAM126AQ9BYI3 521 aaPredicted RBP16.93■□□□□ 0.3
VRK3-221ENST00000600284 CHRDQ9H2X0 955 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 KIF9Q9HAQ2 790 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 NDRG2Q9UN36 371 aaKnown RBP16.93■□□□□ 0.3
VRK3-221ENST00000600284 PCDHGA2Q9Y5H1 932 aa16.93■□□□□ 0.3
VRK3-221ENST00000600284 PTPRZ1P23471 2315 aaPredicted RBP16.92■□□□□ 0.3
VRK3-221ENST00000600284 F5P12259 2224 aa16.92■□□□□ 0.3
VRK3-221ENST00000600284 MYBPHLA2RUH7 354 aa16.92■□□□□ 0.3
VRK3-221ENST00000600284 KLRC4O43908 158 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms