RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 MYO16Q9Y6X6 1858 aa22.81■■□□□ 1.24
PNKP-212ENST00000599454 TRDMT1O14717 391 aaKnown RBP22.8■■□□□ 1.24
PNKP-212ENST00000599454 PPP1R37O75864 691 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 F11P03951 625 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 HMGA1P17096 107 aaKnown RBP22.8■■□□□ 1.24
PNKP-212ENST00000599454 SF3A1Q15459 793 aaKnown RBP22.8■■□□□ 1.24
PNKP-212ENST00000599454 TMEM150AQ86TG1 271 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 LEO1Q8WVC0 666 aaPredicted RBP22.8■■□□□ 1.24
PNKP-212ENST00000599454 MRPS31Q92665 395 aaKnown RBP22.8■■□□□ 1.24
PNKP-212ENST00000599454 EXOC4Q96A65 974 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 HPS4Q9NQG7 708 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 TDP1Q9NUW8 608 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 STK17AQ9UEE5 414 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 HELZP42694 1942 aaKnown RBP22.8■■□□□ 1.24
PNKP-212ENST00000599454 KIAA1549LQ6ZVL6 1849 aa22.8■■□□□ 1.24
PNKP-212ENST00000599454 KMT2BQ9UMN6 2715 aaPredicted RBP22.8■■□□□ 1.24
PNKP-212ENST00000599454 ADSSP30520 456 aa22.79■■□□□ 1.24
PNKP-212ENST00000599454 ZNF268Q14587 947 aaPredicted RBP22.79■■□□□ 1.24
PNKP-212ENST00000599454 PPM1JQ5JR12 505 aa22.79■■□□□ 1.24
PNKP-212ENST00000599454 SFR1Q86XK3 245 aa22.79■■□□□ 1.24
PNKP-212ENST00000599454 MAB21L3Q8N8X9 362 aa22.79■■□□□ 1.24
PNKP-212ENST00000599454 GAB3Q8WWW8 586 aa22.79■■□□□ 1.24
PNKP-212ENST00000599454 USP13Q92995 863 aaPredicted RBP22.79■■□□□ 1.24
PNKP-212ENST00000599454 ABCB6Q9NP58 842 aa22.79■■□□□ 1.24
PNKP-212ENST00000599454 UXTQ9UBK9 157 aaPredicted RBP22.79■■□□□ 1.24
PNKP-212ENST00000599454 CCDC39Q9UFE4 941 aa22.79■■□□□ 1.24
PNKP-212ENST00000599454 CHD8Q9HCK8 2581 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 PRPF40AO75400 957 aaKnown RBP22.78■■□□□ 1.24
PNKP-212ENST00000599454 AKAP3O75969 853 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 GAP43P17677 238 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 RPL10AP62906 217 aaKnown RBP22.78■■□□□ 1.24
PNKP-212ENST00000599454 PDGFRLQ15198 375 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 CC2D1AQ6P1N0 951 aaPredicted RBP22.78■■□□□ 1.24
PNKP-212ENST00000599454 CACNA2D4Q7Z3S7 1137 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 MON1AQ86VX9 555 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 SPATA18Q8TC71 538 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 CACTINQ8WUQ7 758 aaKnown RBP22.78■■□□□ 1.24
PNKP-212ENST00000599454 ACBD6Q9BR61 282 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 STRA6Q9BX79 667 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 EBF3Q9H4W6 596 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 MRPL44Q9H9J2 332 aaKnown RBP22.78■■□□□ 1.24
PNKP-212ENST00000599454 SLC8A2Q9UPR5 921 aa22.78■■□□□ 1.24
PNKP-212ENST00000599454 EXTL3O43909 919 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 RPP40O75818 363 aaKnown RBP22.77■■□□□ 1.24
PNKP-212ENST00000599454 CD2BP2O95400 341 aaKnown RBP22.77■■□□□ 1.24
PNKP-212ENST00000599454 LDHAP00338 332 aaKnown RBP22.77■■□□□ 1.24
PNKP-212ENST00000599454 CDR1P51861 262 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 LIMK1P53667 647 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 MYL7Q01449 175 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 FSTL4Q6MZW2 842 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 DYMQ7RTS9 669 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 BRSK2Q8IWQ3 736 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 TMEM86AQ8N2M4 240 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 PDCL2Q8N4E4 241 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 CAMKK1Q8N5S9 505 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 TRMT2BQ96GJ1 504 aaKnown RBP22.77■■□□□ 1.24
PNKP-212ENST00000599454 ACCSQ96QU6 501 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 TMLHEQ9NVH6 421 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 CCL26Q9Y258 94 aa22.77■■□□□ 1.24
PNKP-212ENST00000599454 PTPRDP23468 1912 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 HUS1O60921 280 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 DRD1P21728 446 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 POLR2BP30876 1174 aaKnown RBP22.76■■□□□ 1.23
PNKP-212ENST00000599454 TFAMQ00059 246 aaKnown RBP22.76■■□□□ 1.23
PNKP-212ENST00000599454 FBXO43Q4G163 708 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 L1TD1Q5T7N2 865 aaKnown RBP22.76■■□□□ 1.23
PNKP-212ENST00000599454 TXNDC8Q6A555 127 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 PKN3Q6P5Z2 889 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 LRRC52Q8N7C0 313 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 EPSTI1Q96J88 318 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 FAM213AQ9BRX8 229 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 PI4K2AQ9BTU6 479 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 MAGED2Q9UNF1 606 aaPredicted RBP22.76■■□□□ 1.23
PNKP-212ENST00000599454 AGAP1Q9UPQ3 857 aa22.76■■□□□ 1.23
PNKP-212ENST00000599454 NUP205Q92621 2012 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 GDF9O60383 454 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 NOL4O94818 638 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 EPN2O95208 641 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 GARTP22102 1010 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 RAP1GAPP47736 663 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 ALCAMQ13740 583 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 INTS6LQ5JSJ4 861 aaKnown RBP22.75■■□□□ 1.23
PNKP-212ENST00000599454 TRIM68Q6AZZ1 485 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 C1orf127Q8N9H9 656 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 MYRFLQ96LU7 910 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 IKZF4Q9H2S9 585 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 TMEM206Q9H813 350 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 UPF2Q9HAU5 1272 aaKnown RBP22.75■■□□□ 1.23
PNKP-212ENST00000599454 GDAP2Q9NXN4 497 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 DDX43Q9NXZ2 648 aaKnown RBP22.75■■□□□ 1.23
PNKP-212ENST00000599454 ITGA11Q9UKX5 1188 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 L1RE1Q9UN81 338 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 PCDHB13Q9Y5F0 798 aa22.75■■□□□ 1.23
PNKP-212ENST00000599454 OTOL1A6NHN0 477 aaPredicted RBP22.74■■□□□ 1.23
PNKP-212ENST00000599454 AXIN1O15169 862 aa22.74■■□□□ 1.23
PNKP-212ENST00000599454 ITGB3P05106 788 aa22.74■■□□□ 1.23
PNKP-212ENST00000599454 ZNF806P0C7X5 589 aa22.74■■□□□ 1.23
PNKP-212ENST00000599454 CCDC192P0DO97 292 aa22.74■■□□□ 1.23
PNKP-212ENST00000599454 TXLNAP40222 546 aa22.74■■□□□ 1.23
PNKP-212ENST00000599454 FAM160A1Q05DH4 1040 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms