RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ACAD10Q6JQN1 1059 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 COLGALT1Q8NBJ5 622 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 MSANTD4Q8NCY6 345 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 OLIG1Q8TAK6 271 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 CTNNBL1Q8WYA6 563 aaPredicted RBP16.4■□□□□ 0.22
UPF1-206ENST00000598471 TRIM11Q96F44 468 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 TMEM169Q96HH4 297 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 NOX5Q96PH1 765 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 PCDHB18PQ96TA0 734 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 ACBD6Q9BR61 282 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 OXCT2Q9BYC2 517 aaPredicted RBP16.4■□□□□ 0.22
UPF1-206ENST00000598471 LHX5Q9H2C1 402 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 DPEP3Q9H4B8 488 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 STK39Q9UEW8 545 aa16.4■□□□□ 0.22
UPF1-206ENST00000598471 NT5C1B-RDH14C9J2C7 533 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 H7C4K7 107 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 M0QYV0 167 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 TLL1O43897 1013 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 MICAL2O94851 1124 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 CYP1A1P04798 512 aaPredicted RBP16.39■□□□□ 0.21
UPF1-206ENST00000598471 ACAT1P24752 427 aaKnown RBP16.39■□□□□ 0.21
UPF1-206ENST00000598471 TKTP29401 623 aaKnown RBP16.39■□□□□ 0.21
UPF1-206ENST00000598471 PBX3P40426 434 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 NOMO3P69849 1222 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 CENPCQ03188 943 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 GOLGA7BQ2TAP0 167 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 NAA35Q5VZE5 725 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 ZNF280DQ6N043 979 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 LCLAT1Q6UWP7 414 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 ZNF662Q6ZS27 426 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 PASD1Q8IV76 773 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 SLC39A11Q8N1S5 342 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 CYFIP2Q96F07 1278 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 IGSF21Q96ID5 467 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 ZSWIM1Q9BR11 485 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 ISCUQ9H1K1 167 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 FAM49BQ9NUQ9 324 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 SPG21Q9NZD8 308 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 TSPAN16Q9UKR8 245 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 NME7Q9Y5B8 376 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 PCDHB12Q9Y5F1 795 aa16.39■□□□□ 0.21
UPF1-206ENST00000598471 ANKRD62A6NC57 917 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 PJA2O43164 708 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 OAZ2O95190 189 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 FTLP02792 175 aaPredicted RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 TMEM253P0C7T8 217 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 SETSIPP0DME0 302 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 UNGP13051 313 aaPredicted RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 FGFR3P22607 806 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 CDH5P33151 784 aaPredicted RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 BCAT1P54687 386 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 SLC8A3P57103 927 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 PSMC1P62191 440 aaKnown RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 USP41Q3LFD5 358 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 MDH1BQ5I0G3 518 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 INTS6LQ5JSJ4 861 aaKnown RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 VARS2Q5ST30 1063 aaKnown RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 RASIP1Q5U651 963 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 CEP57Q86XR8 500 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 PALB2Q86YC2 1186 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 REXO1L1PQ8IX06 675 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 C17orf53Q8N3J3 647 aaPredicted RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 C12orf29Q8N999 325 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 SP7Q8TDD2 431 aaPredicted RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 RNPC3Q96LT9 517 aaKnown RBP16.38■□□□□ 0.21
UPF1-206ENST00000598471 MED10Q9BTT4 135 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 TTPALQ9BTX7 342 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 GPR62Q9BZJ7 368 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 LZTFL1Q9NQ48 299 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 TSC2P49815 1807 aa16.38■□□□□ 0.21
UPF1-206ENST00000598471 OR6C75A6NL08 312 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 USP27XA6NNY8 438 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 HCRTO43612 131 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 MYBL1P10243 752 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 SSTR3P32745 418 aaPredicted RBP16.37■□□□□ 0.21
UPF1-206ENST00000598471 GALCP54803 685 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 SNX16P57768 344 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 PPP1R26Q5T8A7 1209 aaPredicted RBP16.37■□□□□ 0.21
UPF1-206ENST00000598471 LIN9Q5TKA1 542 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 DENND1BQ6P3S1 775 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 ANKS3Q6ZW76 656 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 TMEM173Q86WV6 379 aaPredicted RBP16.37■□□□□ 0.21
UPF1-206ENST00000598471 DCP1BQ8IZD4 617 aaKnown RBP16.37■□□□□ 0.21
UPF1-206ENST00000598471 C1orf131Q8NDD1 294 aaKnown RBP16.37■□□□□ 0.21
UPF1-206ENST00000598471 MYCBPAPQ8TBZ2 947 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 HNRNPABQ99729 332 aaKnown RBP16.37■□□□□ 0.21
UPF1-206ENST00000598471 RTP3Q9BQQ7 232 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 MIS12Q9H081 205 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 TAS2R14Q9NYV8 317 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 RWDD3Q9Y3V2 267 aa16.37■□□□□ 0.21
UPF1-206ENST00000598471 ZNF500O60304 480 aaPredicted RBP16.36■□□□□ 0.21
UPF1-206ENST00000598471 SOD2P04179 222 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 CALB1P05937 261 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 CFHP08603 1231 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 CCDC130P13994 396 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 ABCB4P21439 1286 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 ADORA2BP29275 332 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 GPC5P78333 572 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 PLCB3Q01970 1234 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 KRT17Q04695 432 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms