RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 GUCY2FP51841 1108 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 NOP14P78316 857 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 CCDC173Q0VFZ6 552 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 KCNMA1Q12791 1236 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 TUSC3Q13454 348 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 ZBTB6Q15916 424 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 SGSM1Q2NKQ1 1148 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 ATAT1Q5SQI0 421 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 RARS2Q5T160 578 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 CACNA2D4Q7Z3S7 1137 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 LRRC43Q8N309 656 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 C12orf76Q8N812 135 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 SPC24Q8NBT2 197 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 EHBP1Q8NDI1 1231 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 TAF4BQ92750 862 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 SEMA4DQ92854 862 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 FAM81BQ96LP2 452 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 UROC1Q96N76 676 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 CXCL16Q9H2A7 254 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 EPC1Q9H2F5 836 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 CWH43Q9H720 699 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 PLCB1Q9NQ66 1216 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 ENTPD7Q9NQZ7 604 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 APEX2Q9UBZ4 518 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 USP18Q9UMW8 372 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 SIT1Q9Y3P8 196 aa12.91□□□□□ -0.34
SHKBP1-213ENST00000597325 AKAP13Q12802 2813 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 TDRD15B5MCY1 1934 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 PTMAP06454 111 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 P4HA1P13674 534 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 ATICP31939 592 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 MYL6P60660 151 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 LRMPQ12912 555 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 C9orf57Q5W0N0 161 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 PPM1KQ8N3J5 372 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 LRRC52Q8N7C0 313 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 ZBTB44Q8NCP5 570 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 GSTCDQ8NEC7 633 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 ZNF397Q8NF99 534 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 NETO1Q8TDF5 533 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 ACSF2Q96CM8 615 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 DDX27Q96GQ7 796 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 CASD1Q96PB1 797 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 PI4K2AQ9BTU6 479 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 GOLGA2P5Q9HBQ8 144 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 TBC1D13Q9NVG8 400 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 CEP72Q9P209 647 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 IMPACTQ9P2X3 320 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 SIX4Q9UIU6 781 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 SMG5Q9UPR3 1016 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 PCDHGA2Q9Y5H1 932 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 PATJQ8NI35 1801 aa12.9□□□□□ -0.34
SHKBP1-213ENST00000597325 HELZ2Q9BYK8 2649 aaKnown RBP12.9□□□□□ -0.35
SHKBP1-213ENST00000597325 A0A1W2PQJ5 194 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 C2orf71A6NGG8 1288 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 CASTOR2A6NHX0 329 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 PODXLO00592 558 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 LILRB5O75023 590 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 CLASP2O75122 1294 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 ASS1P00966 412 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 TBXAS1P24557 533 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 LRPAP1P30533 357 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 RPL9P32969 192 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 AFF1P51825 1210 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 POLR2FP61218 127 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 TNNC1P63316 161 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 SOX4Q06945 474 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 RAPGEF1Q13905 1077 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 SV2CQ496J9 727 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 FIGNQ5HY92 759 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 ZNF667Q5HYK9 610 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 SPOUT1Q5T280 376 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 KLHDC7AQ5VTJ3 777 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 ENOSF1Q7L5Y1 443 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 MRPL43Q8N983 215 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 LMO3Q8TAP4 145 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 NELL1Q92832 810 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 SECISBP2LQ93073 1101 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 HPDLQ96IR7 371 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 SPAG5Q96R06 1193 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 NIF3L1Q9GZT8 377 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 MIOSQ9NXC5 875 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 IGSF9Q9P2J2 1179 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 FBXO4Q9UKT5 387 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 ZMIZ1Q9ULJ6 1067 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 CA14Q9ULX7 337 aa12.89□□□□□ -0.35
SHKBP1-213ENST00000597325 ANO9A1A5B4 782 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 STAU1O95793 577 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 CST3P01034 146 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 UCHL3P15374 230 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 TAF6P49848 677 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 MFAP3P55082 362 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 GSDMDP57764 484 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 YWHAEP62258 255 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 APBA1Q02410 837 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 NAB2Q15742 525 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 TSR1Q2NL82 804 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 OTOP3Q7RTS5 596 aa12.88□□□□□ -0.35
SHKBP1-213ENST00000597325 CNGA4Q8IV77 575 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms