RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 IKZF4Q9H2S9 585 aa10.76□□□□□ -0.69
LIG1-209ENST00000596104 ST6GALNAC4Q9H4F1 302 aa10.76□□□□□ -0.69
LIG1-209ENST00000596104 SMOC1Q9H4F8 434 aa10.76□□□□□ -0.69
LIG1-209ENST00000596104 DPP3Q9NY33 737 aa10.76□□□□□ -0.69
LIG1-209ENST00000596104 SLC8A2Q9UPR5 921 aa10.76□□□□□ -0.69
LIG1-209ENST00000596104 CHD6Q8TD26 2715 aa10.76□□□□□ -0.69
LIG1-209ENST00000596104 KPNA7A9QM74 516 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 CSH1P0DML2 217 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 CSH2P0DML3 217 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 PLCG1P19174 1290 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 DRD1P21728 446 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 GJA4P35212 333 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 GALK1P51570 392 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 GRIN1Q05586 938 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 BFSP1Q12934 665 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 DHX8Q14562 1220 aaKnown RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 ZNF268Q14587 947 aaPredicted RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 PDGFRLQ15198 375 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 FBXO43Q4G163 708 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 ZC2HC1CQ53FD0 456 aaPredicted RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 ADALQ6DHV7 355 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 TCEAL6Q6IPX3 200 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 DCP1BQ8IZD4 617 aaKnown RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 LEO1Q8WVC0 666 aaPredicted RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 MRPS31Q92665 395 aaKnown RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 RAD54LQ92698 747 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 TCEAL3Q969E4 200 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 HHIPQ96QV1 700 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 LSM14BQ9BX40 385 aaKnown RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 DUSP15Q9H1R2 295 aaPredicted RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 VPS45Q9NRW7 570 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 AGO2Q9UKV8 859 aaKnown RBP10.75□□□□□ -0.69
LIG1-209ENST00000596104 KIF3AQ9Y496 699 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 PCDHB5Q9Y5E4 795 aa10.75□□□□□ -0.69
LIG1-209ENST00000596104 TSC2P49815 1807 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 SDK1Q7Z5N4 2213 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 NUP210Q8TEM1 1887 aaPredicted RBP10.74□□□□□ -0.69
LIG1-209ENST00000596104 PRPF40AO75400 957 aaKnown RBP10.74□□□□□ -0.69
LIG1-209ENST00000596104 PPP1R37O75864 691 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 NOL4O94818 638 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 KCNK5O95279 499 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 ADSSP30520 456 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 ABCD1P33897 745 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 UBA7P41226 1012 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 WNT7BP56706 349 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 AMPD2Q01433 879 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 FAM160A1Q05DH4 1040 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 MTF1Q14872 753 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 KARSQ15046 597 aaKnown RBP10.74□□□□□ -0.69
LIG1-209ENST00000596104 ZNF77Q15935 545 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 NFE2Q16621 373 aaPredicted RBP10.74□□□□□ -0.69
LIG1-209ENST00000596104 SV2CQ496J9 727 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 SDHAF4Q5VUM1 108 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 SLFN12LQ6IEE8 588 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 SYT13Q7L8C5 426 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 PDCL2Q8N4E4 241 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 CALML4Q96GE6 196 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 MYRFLQ96LU7 910 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 SLC22A12Q96S37 553 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 PKMYT1Q99640 499 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 P2RY13Q9BPV8 354 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 PI4K2AQ9BTU6 479 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 ZHX3Q9H4I2 956 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 ECT2Q9H8V3 914 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 ABCB6Q9NP58 842 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 PPP4R2Q9NY27 417 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 MAGED2Q9UNF1 606 aaPredicted RBP10.74□□□□□ -0.69
LIG1-209ENST00000596104 CEP295Q9C0D2 2601 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 CFAP47Q6ZTR5 3102 aa10.74□□□□□ -0.69
LIG1-209ENST00000596104 KIF26AQ9ULI4 1882 aaPredicted RBP10.74□□□□□ -0.69
LIG1-209ENST00000596104 BCLAF3A2AJT9 711 aaKnown RBP10.73□□□□□ -0.69
LIG1-209ENST00000596104 DCLK1O15075 740 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 TBCAO75347 108 aaKnown RBP10.73□□□□□ -0.69
LIG1-209ENST00000596104 APBB3O95704 486 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 TSPY1Q01534 308 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 USP4Q13107 963 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 DMC1Q14565 340 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 DDR2Q16832 855 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 CCDC142Q17RM4 750 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 RNF43Q68DV7 783 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 SCARA3Q6AZY7 606 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 CC2D1AQ6P1N0 951 aaPredicted RBP10.73□□□□□ -0.69
LIG1-209ENST00000596104 ZNF720Q7Z2F6 126 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 NT5DC4Q86YG4 428 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 CPA6Q8N4T0 437 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 C1orf127Q8N9H9 656 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 RPLP0P6Q8NHW5 317 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 CXorf38Q8TB03 319 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 OSCP1Q8WVF1 389 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 LARP4BQ92615 738 aaKnown RBP10.73□□□□□ -0.69
LIG1-209ENST00000596104 TRMT2BQ96GJ1 504 aaKnown RBP10.73□□□□□ -0.69
LIG1-209ENST00000596104 ZNF560Q96MR9 790 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 ACBD6Q9BR61 282 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 STRA6Q9BX79 667 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 TMEM206Q9H813 350 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 EBF1Q9UH73 591 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 L1RE1Q9UN81 338 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 WNT6Q9Y6F9 365 aa10.73□□□□□ -0.69
LIG1-209ENST00000596104 IL18RAPO95256 599 aa10.72□□□□□ -0.69
LIG1-209ENST00000596104 KRT18P05783 430 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms