RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 UBE2HP62256 183 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 STIM1Q13586 685 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 ZNF667Q5HYK9 610 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 FAM171BQ6P995 826 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 C4orf50Q6ZRC1 276 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 DNAJB7Q7Z6W7 309 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-206ENST00000595974 SHKBP1Q8TBC3 707 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 TSG101Q99816 390 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 LPIN3Q9BQK8 851 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 PI4K2AQ9BTU6 479 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 GPR88Q9GZN0 384 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 SNX25Q9H3E2 840 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 ZNF334Q9HCZ1 680 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-206ENST00000595974 SLC2A4RGQ9NR83 387 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 WNT16Q9UBV4 365 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 GTF3C4Q9UKN8 822 aa17.34■□□□□ 0.37
TRIM28-206ENST00000595974 ARIH1Q9Y4X5 557 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-206ENST00000595974 MYH10P35580 1976 aa17.33■□□□□ 0.37
TRIM28-206ENST00000595974 NRG2O14511 850 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-206ENST00000595974 CETN3O15182 167 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 HCRTO43612 131 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 CLSTN1O94985 981 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 VNN1O95497 513 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 CDR1P51861 262 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 RPL10AP62906 217 aaKnown RBP17.33■□□□□ 0.36
TRIM28-206ENST00000595974 LRRC63Q05C16 580 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 TAF12Q16514 161 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 C1orf220Q5T0J3 134 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 SV2AQ7L0J3 742 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 SPATA2LQ8IUW3 424 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-206ENST00000595974 ADSSL1Q8N142 457 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 TAF4BQ92750 862 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 ELSPBP1Q96BH3 223 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 ASB16Q96NS5 453 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 KXD1Q9BQD3 176 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 MRPL45Q9BRJ2 306 aaKnown RBP17.33■□□□□ 0.36
TRIM28-206ENST00000595974 RPP25Q9BUL9 199 aaKnown RBP17.33■□□□□ 0.36
TRIM28-206ENST00000595974 MFSD1Q9H3U5 465 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 SLITRK6Q9H5Y7 841 aa17.33■□□□□ 0.36
TRIM28-206ENST00000595974 NXF1Q9UBU9 619 aaKnown RBP17.33■□□□□ 0.36
TRIM28-206ENST00000595974 MIA3Q5JRA6 1907 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 ANAPC1Q9H1A4 1944 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 A0A1W2PRU2 124 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 MYBPHLA2RUH7 354 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 PSMA7O14818 248 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 PDGFBP01127 241 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-206ENST00000595974 CFHP08603 1231 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 TRIM49P0CI25 452 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 TRIM49CP0CI26 452 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 EPB41P11171 864 aaKnown RBP17.32■□□□□ 0.36
TRIM28-206ENST00000595974 P4HA1P13674 534 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 GJA1P17302 382 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 FCARP24071 287 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 LMO2P25791 158 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 GABRR2P28476 465 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 CDC25CP30307 473 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 GNL1P36915 607 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-206ENST00000595974 PIK3CAP42336 1068 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 MAGEA11P43364 429 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 MCCD1P59942 119 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-206ENST00000595974 PSMC1P62191 440 aaKnown RBP17.32■□□□□ 0.36
TRIM28-206ENST00000595974 TEAD2Q15562 447 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 CCDC142Q17RM4 750 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 SGSM1Q2NKQ1 1148 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 FAM78AQ5JUQ0 283 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 POTEHQ6S545 545 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 GAREM2Q75VX8 874 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 ZC3H3Q8IXZ2 948 aaKnown RBP17.32■□□□□ 0.36
TRIM28-206ENST00000595974 ST13P5Q8NFI4 369 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-206ENST00000595974 OR6B3Q8NGW1 331 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 GPR152Q8TDT2 470 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 SMARCD2Q92925 531 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 MYLPFQ96A32 169 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 GCNAQ96QF7 691 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 KCNH6Q9H252 994 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 TRPV4Q9HBA0 871 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 ZFP14Q9HCL3 533 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 CRTAC1Q9NQ79 661 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 RAPGEFL1Q9UHV5 662 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 MAN1B1Q9UKM7 699 aa17.32■□□□□ 0.36
TRIM28-206ENST00000595974 SLC16A3O15427 465 aaKnown RBP17.31■□□□□ 0.36
TRIM28-206ENST00000595974 ATP2C2O75185 946 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 ASS1P00966 412 aaKnown RBP17.31■□□□□ 0.36
TRIM28-206ENST00000595974 HLA-DRAP01903 254 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 PDGFRBP09619 1106 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 CSH1P0DML2 217 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 CSH2P0DML3 217 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 CYP2F1P24903 491 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 GTF2H1P32780 548 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 FKBP3Q00688 224 aaKnown RBP17.31■□□□□ 0.36
TRIM28-206ENST00000595974 ARHGAP15Q53QZ3 475 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 VSTM1Q6UX27 236 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 SIX5Q8N196 739 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 GIPC2Q8TF65 315 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 IMPG2Q9BZV3 1241 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 SMYD3Q9H7B4 428 aa17.31■□□□□ 0.36
TRIM28-206ENST00000595974 WDFY4Q6ZS81 3184 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 TICRRQ7Z2Z1 1910 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 A8MXQ7 604 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 HMGA1P17096 107 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms