RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 LPAL2Q16609 132 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 LRRC52Q8N7C0 313 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 CXorf38Q8TB03 319 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 ACBD6Q9BR61 282 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 ITGA11Q9UKX5 1188 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 SOBPA7XYQ1 873 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 CHURC1-FNTBB4DL54 471 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 CSH1P0DML2 217 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 CSH2P0DML3 217 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 AVPR1AP37288 418 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 STAT6P42226 847 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 FNTBP49356 437 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 PRR23BQ6ZRT6 265 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 LONP2Q86WA8 852 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 SYCP3Q8IZU3 236 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 TMEM86AQ8N2M4 240 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 FAM83CQ9BQN1 747 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 PI4K2AQ9BTU6 479 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 ABCB6Q9NP58 842 aa25.73■■□□□ 1.71
LSM4-202ENST00000593564 CDV3Q9UKY7 258 aaKnown RBP25.73■■□□□ 1.71
LSM4-202ENST00000593564 HRO43593 1189 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 EXTL3O43909 919 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 HUS1O60921 280 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 LRP3O75074 770 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 PRPF40AO75400 957 aaKnown RBP25.72■■□□□ 1.71
LSM4-202ENST00000593564 RETP07949 1114 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 HOXA6P31267 233 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 GPR15P49685 360 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 SIM2Q14190 667 aaPredicted RBP25.72■■□□□ 1.71
LSM4-202ENST00000593564 MAB21L3Q8N8X9 362 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 SPATA18Q8TC71 538 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 USP13Q92995 863 aaPredicted RBP25.72■■□□□ 1.71
LSM4-202ENST00000593564 CBWD1Q9BRT8 395 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 FGFBP2Q9BYJ0 223 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 TMEM206Q9H813 350 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 KIF9Q9HAQ2 790 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 GKN1Q9NS71 199 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 PANK4Q9NVE7 773 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 GDAP2Q9NXN4 497 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 DDX43Q9NXZ2 648 aaKnown RBP25.72■■□□□ 1.71
LSM4-202ENST00000593564 CCL26Q9Y258 94 aa25.72■■□□□ 1.71
LSM4-202ENST00000593564 KIF26AQ9ULI4 1882 aaPredicted RBP25.71■■□□□ 1.71
LSM4-202ENST00000593564 A0A087X0B3 334 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 TULP1O00294 542 aaPredicted RBP25.71■■□□□ 1.71
LSM4-202ENST00000593564 ATXN1P54253 815 aaKnown RBP25.71■■□□□ 1.71
LSM4-202ENST00000593564 MYL7Q01449 175 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 SPEM2Q0P670 501 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 BFSP1Q12934 665 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 SLC39A14Q15043 492 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 INTS6LQ5JSJ4 861 aaKnown RBP25.71■■□□□ 1.71
LSM4-202ENST00000593564 CSGALNACT2Q8N6G5 542 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 MRPS31Q92665 395 aaKnown RBP25.71■■□□□ 1.71
LSM4-202ENST00000593564 USP28Q96RU2 1077 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 PKMYT1Q99640 499 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 TDP1Q9NUW8 608 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 C2orf42Q9NWW7 574 aa25.71■■□□□ 1.71
LSM4-202ENST00000593564 SPTBN2O15020 2390 aa25.7■■□□□ 1.71
LSM4-202ENST00000593564 GOLGA8IPA6NC78 632 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 GOLGA8JA6NMD2 632 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 RPL10AP62906 217 aaKnown RBP25.7■■□□□ 1.7
LSM4-202ENST00000593564 RBP5P82980 135 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 RUNX3Q13761 415 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 TXNDC8Q6A555 127 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 SCARA3Q6AZY7 606 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 MON1AQ86VX9 555 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 TOP6BLQ8N6T0 577 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 FAM84AQ96KN4 292 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 PANK2Q9BZ23 570 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 PDE11AQ9HCR9 933 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 HPS4Q9NQG7 708 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 UXTQ9UBK9 157 aaPredicted RBP25.7■■□□□ 1.7
LSM4-202ENST00000593564 SIX4Q9UIU6 781 aa25.7■■□□□ 1.7
LSM4-202ENST00000593564 MAGED2Q9UNF1 606 aaPredicted RBP25.7■■□□□ 1.7
LSM4-202ENST00000593564 KIAA0391O15091 583 aaKnown RBP25.69■■□□□ 1.7
LSM4-202ENST00000593564 NOL4O94818 638 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 ACAT1P24752 427 aaKnown RBP25.69■■□□□ 1.7
LSM4-202ENST00000593564 CYP2F1P24903 491 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 ZNF268Q14587 947 aaPredicted RBP25.69■■□□□ 1.7
LSM4-202ENST00000593564 SDHAF4Q5VUM1 108 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 STKLD1Q8NE28 680 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 TRMT2BQ96GJ1 504 aaKnown RBP25.69■■□□□ 1.7
LSM4-202ENST00000593564 INTS4Q96HW7 963 aaKnown RBP25.69■■□□□ 1.7
LSM4-202ENST00000593564 MYRFLQ96LU7 910 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 RTKNQ9BST9 563 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 MTMR12Q9C0I1 747 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 PCIF1Q9H4Z3 704 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 MTMR6Q9Y217 621 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 SNX9Q9Y5X1 595 aa25.69■■□□□ 1.7
LSM4-202ENST00000593564 GABRDO14764 452 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 PRPF6O94906 941 aaKnown RBP25.68■■□□□ 1.7
LSM4-202ENST00000593564 KRT19P08727 400 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 TMEM191BP0C7N4 346 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 LHX1P48742 406 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 SRSF5Q13243 272 aaKnown RBP25.68■■□□□ 1.7
LSM4-202ENST00000593564 DDR2Q16832 855 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 CFAP221Q4G0U5 840 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 TMEM196Q5HYL7 178 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 HEATR6Q6AI08 1181 aaKnown RBP25.68■■□□□ 1.7
LSM4-202ENST00000593564 WDR5BQ86VZ2 330 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 OSTM1Q86WC4 334 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms