RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CGRRF1Q99675 332 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 CORO1BQ9BR76 489 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 PCIF1Q9H4Z3 704 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 VRTNQ9H8Y1 702 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 DMAC2Q9NW81 257 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 RMND1Q9NWS8 449 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 SERTAD1Q9UHV2 236 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 FBXO4Q9UKT5 387 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 TRAF3IP3Q9Y228 551 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 FRMD4BQ9Y2L6 1034 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 MRPS17Q9Y2R5 130 aaKnown RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 PCDHGA2Q9Y5H1 932 aa11.27□□□□□ -0.61
LIG3-212ENST00000590181 TIMM13Q9Y5L4 95 aaPredicted RBP11.27□□□□□ -0.61
LIG3-212ENST00000590181 A0A1B0GVL5 298 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 MTMR11A4FU01 709 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 MAN2B1O00754 1011 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 CALUO43852 315 aaPredicted RBP11.26□□□□□ -0.61
LIG3-212ENST00000590181 KLRC4O43908 158 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 EXOC3O60645 756 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 TACC1O75410 805 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 KRT19P08727 400 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 P4HA1P13674 534 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 PFKLP17858 780 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 PPP1R2P41236 205 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 MAGEA11P43364 429 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 PDE6CP51160 858 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 GPC5P78333 572 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 NTHL1P78549 312 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 LMNB2Q03252 620 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 CSTF1Q05048 431 aaKnown RBP11.26□□□□□ -0.61
LIG3-212ENST00000590181 CYP24A1Q07973 514 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 SNW1Q13573 536 aaKnown RBP11.26□□□□□ -0.61
LIG3-212ENST00000590181 WSCD1Q658N2 575 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 KRBA2Q6ZNG9 492 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 TRAPPC11Q7Z392 1133 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 CXorf38Q8TB03 319 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 ITFG1Q8TB96 612 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 TMC2Q8TDI7 906 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 SECISBP2LQ93073 1101 aaKnown RBP11.26□□□□□ -0.61
LIG3-212ENST00000590181 TIGD1Q96MW7 591 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 GSDMAQ96QA5 445 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 GCNAQ96QF7 691 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 KXD1Q9BQD3 176 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 IER2Q9BTL4 223 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 RPP25Q9BUL9 199 aaKnown RBP11.26□□□□□ -0.61
LIG3-212ENST00000590181 DDX23Q9BUQ8 820 aaKnown RBP11.26□□□□□ -0.61
LIG3-212ENST00000590181 EPC1Q9H2F5 836 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 FAM124BQ9H5Z6 455 aaPredicted RBP11.26□□□□□ -0.61
LIG3-212ENST00000590181 SLC39A2Q9NP94 309 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 CEP72Q9P209 647 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 CDH9Q9ULB4 789 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 USP18Q9UMW8 372 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 YIPF1Q9Y548 306 aa11.26□□□□□ -0.61
LIG3-212ENST00000590181 RALGAPA1Q6GYQ0 2036 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 GOLGA8IPA6NC78 632 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 GOLGA8JA6NMD2 632 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 PPEF2O14830 753 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 ZNF202O95125 648 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 SMC2O95347 1197 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 CSH1P0DML2 217 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 CSH2P0DML3 217 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 HAPLN1P10915 354 aaPredicted RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 PSMC3P17980 439 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 SDHBP21912 280 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 WARSP23381 471 aaKnown RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 PPP3CCP48454 512 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 GUCY2FP51841 1108 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 NDUFA8P51970 172 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 MCCD1P59942 119 aaPredicted RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 PLCB2Q00722 1185 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 STK4Q13043 487 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 TRPC3Q13507 836 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 KMT5BQ4FZB7 885 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 SLC39A12Q504Y0 691 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 COBLL1Q53SF7 1204 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 VSTM1Q6UX27 236 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 DNAJB7Q7Z6W7 309 aaPredicted RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 CBWD2Q8IUF1 395 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 GUF1Q8N442 669 aaKnown RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 PDCL2Q8N4E4 241 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 GPR161Q8N6U8 529 aaKnown RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 KIAA1958Q8N8K9 716 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 ATRIPQ8WXE1 791 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 TRMT2BQ96GJ1 504 aaKnown RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 ASB16Q96NS5 453 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 TRMT61BQ9BVS5 477 aaKnown RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 FGFBP2Q9BYJ0 223 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 MTMR12Q9C0I1 747 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 BLZF1Q9H2G9 400 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 LTB4R2Q9NPC1 389 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 HCFC1R1Q9NWW0 138 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 DDX43Q9NXZ2 648 aaKnown RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 CIZ1Q9ULV3 898 aaPredicted RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 MTF2Q9Y483 593 aaPredicted RBP11.25□□□□□ -0.61
LIG3-212ENST00000590181 SNX9Q9Y5X1 595 aa11.25□□□□□ -0.61
LIG3-212ENST00000590181 F5P12259 2224 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 TSC2P49815 1807 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 PRR5-ARHGAP8B1AHC4 643 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 STX10O60499 249 aa11.24□□□□□ -0.61
LIG3-212ENST00000590181 DLATP10515 647 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms