RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 KIF5AQ12840 1032 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 PTPN14Q15678 1187 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 IFI16Q16666 785 aaKnown RBP13.47□□□□□ -0.25
VMP1-202ENST00000585847 PTPN21Q16825 1174 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 ZNF667Q5HYK9 610 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 FAM171A1Q5VUB5 890 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 KIAA0319Q5VV43 1072 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 RSPO2Q6UXX9 243 aaPredicted RBP13.47□□□□□ -0.25
VMP1-202ENST00000585847 RAD9BQ6WBX8 426 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.47□□□□□ -0.25
VMP1-202ENST00000585847 OSTM1Q86WC4 334 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 VPS52Q8N1B4 723 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 SPATA18Q8TC71 538 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 AUTS2Q8WXX7 1259 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 TATDN2Q93075 761 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 PPP1R13BQ96KQ4 1090 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 RTP3Q9BQQ7 232 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 PCDHB8Q9UN66 801 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 L1RE1Q9UN81 338 aa13.47□□□□□ -0.25
VMP1-202ENST00000585847 TIMM13Q9Y5L4 95 aaPredicted RBP13.47□□□□□ -0.25
VMP1-202ENST00000585847 PLXNA3P51805 1871 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 CYB561D2O14569 222 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 TBC1D4O60343 1298 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 CYP11A1P05108 521 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 GZMAP12544 262 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 EIF4A3P38919 411 aaKnown RBP13.46□□□□□ -0.25
VMP1-202ENST00000585847 APBA1Q02410 837 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 DSG1Q02413 1049 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 KRT17Q04695 432 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 PTK2Q05397 1052 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 SOWAHAQ2M3V2 549 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 SV2CQ496J9 727 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 WSCD1Q658N2 575 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 NYAP1Q6ZVC0 841 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 RNF10Q8N5U6 811 aaKnown RBP13.46□□□□□ -0.25
VMP1-202ENST00000585847 LNX1Q8TBB1 728 aaPredicted RBP13.46□□□□□ -0.25
VMP1-202ENST00000585847 KBTBD7Q8WVZ9 684 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 TRIM11Q96F44 468 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 GPR88Q9GZN0 384 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 TLR9Q9NR96 1032 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 LCMT1Q9UIC8 334 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 KIAA1257Q9ULG3 409 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 COG5Q9UP83 839 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 MTCH2Q9Y6C9 303 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 REV3LO60673 3130 aa13.46□□□□□ -0.25
VMP1-202ENST00000585847 XIRP2A4UGR9 3374 aa13.46□□□□□ -0.26
VMP1-202ENST00000585847 HIDE1A8MVS5 230 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 SYN3O14994 580 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 PJA2O43164 708 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 ADAM12O43184 909 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 HCRTO43612 131 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 LSM8O95777 96 aaKnown RBP13.45□□□□□ -0.26
VMP1-202ENST00000585847 PAEPP09466 180 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 TYMPP19971 482 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 POU3F3P20264 500 aaPredicted RBP13.45□□□□□ -0.26
VMP1-202ENST00000585847 ASPAP45381 313 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 TNNC1P63316 161 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 TUBB2AQ13885 445 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 STILQ15468 1287 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 USP41Q3LFD5 358 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 VARS2Q5ST30 1063 aaKnown RBP13.45□□□□□ -0.26
VMP1-202ENST00000585847 PRSS55Q6UWB4 352 aaPredicted RBP13.45□□□□□ -0.26
VMP1-202ENST00000585847 DSTYKQ6XUX3 929 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 TOGARAM2Q6ZUX3 1019 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 DPH6Q7L8W6 267 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 ADGRD2Q7Z7M1 963 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 KIAA1328Q86T90 577 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 ARHGEF19Q8IW93 802 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 PDCL2Q8N4E4 241 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 EPS8L1Q8TE68 723 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 PIK3R5Q8WYR1 880 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 CHP1Q99653 195 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 TCF25Q9BQ70 676 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 TTPALQ9BTX7 342 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 TUBB2BQ9BVA1 445 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 BCO2Q9BYV7 579 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 LMAN2LQ9H0V9 348 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 SMYD3Q9H7B4 428 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 AJAP1Q9UKB5 411 aaPredicted RBP13.45□□□□□ -0.26
VMP1-202ENST00000585847 SNX9Q9Y5X1 595 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 IRAK3Q9Y616 596 aa13.45□□□□□ -0.26
VMP1-202ENST00000585847 PRRC2BQ5JSZ5 2229 aaKnown RBP13.45□□□□□ -0.26
VMP1-202ENST00000585847 A0A0A6YYK5 440 aaPredicted RBP13.44□□□□□ -0.26
VMP1-202ENST00000585847 C2orf71A6NGG8 1288 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 GABRDO14764 452 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 MED7O43513 233 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 CSPG5O95196 566 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 RAP1GAPP47736 663 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 GLUD2P49448 558 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 CDH8P55286 799 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 ETF1P62495 437 aaKnown RBP13.44□□□□□ -0.26
VMP1-202ENST00000585847 CDR2Q01850 454 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 GOLGA8FQ08AF8 430 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 GOLGA8DPQ0D2H9 430 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 ELAVL2Q12926 359 aaKnown RBP13.44□□□□□ -0.26
VMP1-202ENST00000585847 ARHGAP44Q17R89 818 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 WDR72Q3MJ13 1102 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 PLPP4Q5VZY2 271 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 CEP57Q86XR8 500 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 GPR65Q8IYL9 337 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms