RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CDK11BP21127 795 aaKnown RBP22.02■■□□□ 1.12
VPS53-210ENST00000571456 KLRC2P26717 231 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 PCSK1P29120 753 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 ZNF445P59923 1031 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 NOP14P78316 857 aaKnown RBP22.02■■□□□ 1.12
VPS53-210ENST00000571456 RAB33AQ14088 237 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 TPGS2Q68CL5 300 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 PDCL2Q8N4E4 241 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 AOPEPQ8N6M6 819 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 FAM84AQ96KN4 292 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 CNTNAP3BQ96NU0 1288 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 MMS19Q96T76 1030 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 CNTNAP3Q9BZ76 1288 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 SMOC2Q9H3U7 446 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 L1RE1Q9UN81 338 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 CHD6Q8TD26 2715 aa22.02■■□□□ 1.12
VPS53-210ENST00000571456 MAP1BP46821 2468 aaKnown RBP22.01■■□□□ 1.11
VPS53-210ENST00000571456 LRRC10BA6NIK2 292 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 GABRDO14764 452 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 HOXB8P17481 243 aaPredicted RBP22.01■■□□□ 1.11
VPS53-210ENST00000571456 WARSP23381 471 aaKnown RBP22.01■■□□□ 1.11
VPS53-210ENST00000571456 SOWAHAQ2M3V2 549 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 VWA3BQ502W6 1294 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 PRSS55Q6UWB4 352 aaPredicted RBP22.01■■□□□ 1.11
VPS53-210ENST00000571456 ADGRF2Q8IZF7 708 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 AUTS2Q8WXX7 1259 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 CASP10Q92851 521 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 B3GALT6Q96L58 329 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 ACBD6Q9BR61 282 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 NIF3L1Q9GZT8 377 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 NDST4Q9H3R1 872 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 TSPY26PQ9H489 355 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 FBXL5Q9UKA1 691 aa22.01■■□□□ 1.11
VPS53-210ENST00000571456 C2CD4DB7Z1M9 353 aa22■■□□□ 1.11
VPS53-210ENST00000571456 CLASP2O75122 1294 aaKnown RBP22■■□□□ 1.11
VPS53-210ENST00000571456 GLUD1P00367 558 aa22■■□□□ 1.11
VPS53-210ENST00000571456 TBXAS1P24557 533 aaPredicted RBP22■■□□□ 1.11
VPS53-210ENST00000571456 YWHAEP62258 255 aaKnown RBP22■■□□□ 1.11
VPS53-210ENST00000571456 TSPY1Q01534 308 aa22■■□□□ 1.11
VPS53-210ENST00000571456 IQCB1Q15051 598 aa22■■□□□ 1.11
VPS53-210ENST00000571456 WSCD1Q658N2 575 aa22■■□□□ 1.11
VPS53-210ENST00000571456 GBP6Q6ZN66 633 aa22■■□□□ 1.11
VPS53-210ENST00000571456 DHX40Q8IX18 779 aaKnown RBP22■■□□□ 1.11
VPS53-210ENST00000571456 KIAA2013Q8IYS2 634 aa22■■□□□ 1.11
VPS53-210ENST00000571456 TMEM130Q8N3G9 435 aa22■■□□□ 1.11
VPS53-210ENST00000571456 C2orf15Q8WU43 125 aaKnown RBP22■■□□□ 1.11
VPS53-210ENST00000571456 CLSTN3Q9BQT9 956 aa22■■□□□ 1.11
VPS53-210ENST00000571456 BCO2Q9BYV7 579 aa22■■□□□ 1.11
VPS53-210ENST00000571456 PLEKHA4Q9H4M7 779 aa22■■□□□ 1.11
VPS53-210ENST00000571456 DZANK1Q9NVP4 752 aa22■■□□□ 1.11
VPS53-210ENST00000571456 HSFX1Q9UBD0 423 aa22■■□□□ 1.11
VPS53-210ENST00000571456 NXF1Q9UBU9 619 aaKnown RBP22■■□□□ 1.11
VPS53-210ENST00000571456 LIMA1Q9UHB6 759 aaKnown RBP22■■□□□ 1.11
VPS53-210ENST00000571456 CDY1Q9Y6F8 540 aa22■■□□□ 1.11
VPS53-210ENST00000571456 CFAP47Q6ZTR5 3102 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 GOLGA6L19H0YKK7 550 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 CLCN4P51793 760 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 ANGPT1Q15389 498 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 MAPRE1Q15691 268 aaKnown RBP21.99■■□□□ 1.11
VPS53-210ENST00000571456 UNC93AQ86WB7 457 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 DCP1BQ8IZD4 617 aaKnown RBP21.99■■□□□ 1.11
VPS53-210ENST00000571456 EHBP1Q8NDI1 1231 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 ZNF461Q8TAF7 563 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 NT5C1BQ96P26 610 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 SNX25Q9H3E2 840 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 SEMA4AQ9H3S1 761 aa21.99■■□□□ 1.11
VPS53-210ENST00000571456 TIMM13Q9Y5L4 95 aaPredicted RBP21.99■■□□□ 1.11
VPS53-210ENST00000571456 LMNAP02545 664 aaKnown RBP21.98■■□□□ 1.11
VPS53-210ENST00000571456 OR1D2P34982 312 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 GPR17Q13304 367 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 NFE2Q16621 373 aaPredicted RBP21.98■■□□□ 1.11
VPS53-210ENST00000571456 EXOC3L4Q17RC7 722 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 LLGL2Q6P1M3 1020 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 CCDC105Q8IYK2 499 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 FLCNQ8NFG4 579 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 SLC22A17Q8WUG5 538 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 SEMA4DQ92854 862 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 JAKMIP2Q96AA8 810 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 NECTIN4Q96NY8 510 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 POMKQ9H5K3 350 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 CBX8Q9HC52 389 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 DDX43Q9NXZ2 648 aaKnown RBP21.98■■□□□ 1.11
VPS53-210ENST00000571456 CDH9Q9ULB4 789 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 DAAM1Q9Y4D1 1078 aa21.98■■□□□ 1.11
VPS53-210ENST00000571456 ABLIM3O94929 683 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 ASGR2P07307 311 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 GNL1P36915 607 aaPredicted RBP21.97■■□□□ 1.11
VPS53-210ENST00000571456 ASPAP45381 313 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 ROR1Q01973 937 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 GCNT1Q02742 428 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 KRT31Q15323 416 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 UVSSAQ2YD98 709 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 MIIPQ5JXC2 388 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 FKBP15Q5T1M5 1219 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 CWF19L1Q69YN2 538 aaKnown RBP21.97■■□□□ 1.11
VPS53-210ENST00000571456 LILRA6Q6PI73 481 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 ENOSF1Q7L5Y1 443 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 KBTBD7Q8WVZ9 684 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 TNIP3Q96KP6 325 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 GCNT4Q9P109 453 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms