RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FIGNQ5HY92 759 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 WDR44Q5JSH3 913 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 FKBP15Q5T1M5 1219 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 TMEM184AQ6ZMB5 413 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 ACOT1Q86TX2 421 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 UNC93AQ86WB7 457 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 GLYCTKQ8IVS8 523 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 FUKQ8N0W3 1084 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 C12orf29Q8N999 325 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 ANKRD20A12PQ8NF67 263 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 MYCBPAPQ8TBZ2 947 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 JAKMIP2Q96AA8 810 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 SYT15Q9BQS2 421 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 SYT11Q9BT88 431 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 B3GNT5Q9BYG0 378 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 IMPG2Q9BZV3 1241 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 NSUN3Q9H649 340 aaKnown RBP9.91□□□□□ -0.82
VPS35-211ENST00000569950 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.91□□□□□ -0.82
VPS35-211ENST00000569950 CLEC1BQ9P126 229 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 FBXW11Q9UKB1 542 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 GTF3C4Q9UKN8 822 aa9.91□□□□□ -0.82
VPS35-211ENST00000569950 ITIH6Q6UXX5 1313 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 MYO16Q9Y6X6 1858 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 H7C4K7 107 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 PES1O00541 588 aaKnown RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 TBX10O75333 385 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 GABBR2O75899 941 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 C1RP00736 705 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 SPATA31D3P0C874 917 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 ATF2P15336 505 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 PTPN1P18031 435 aaKnown RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 NRIP1P48552 1158 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 POLR2FP61218 127 aaKnown RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 CETN1Q12798 172 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 ADAM15Q13444 863 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 DRAP1Q14919 205 aaPredicted RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 PKDCCQ504Y2 493 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 KIAA1841Q6NSI8 718 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 PDXDC1Q6P996 788 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 SPATA31D4Q6ZUB0 917 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 RBM23Q86U06 439 aaKnown RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 TCEAL8Q8IYN2 117 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 ATAD1Q8NBU5 361 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 RBBP8NLQ8NC74 664 aaPredicted RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 B3GALNT2Q8NCR0 500 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 ZMIZ2Q8NF64 920 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 OR6B3Q8NGW1 331 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 ZNF461Q8TAF7 563 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 DDX1Q92499 740 aaKnown RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 MYLPFQ96A32 169 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 ZNF707Q96C28 371 aaPredicted RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 PCED1BQ96HM7 432 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 STK33Q9BYT3 514 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 ZNF518BQ9C0D4 1074 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 NOCTQ9UK39 431 aaKnown RBP9.9□□□□□ -0.82
VPS35-211ENST00000569950 CDH9Q9ULB4 789 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 HCFC2Q9Y5Z7 792 aa9.9□□□□□ -0.82
VPS35-211ENST00000569950 TRIOO75962 3097 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 ARHGEF37A1IGU5 675 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 A8MXQ7 604 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 O00370 1275 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 CLDN5O00501 218 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 SOAT2O75908 522 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 BEST1O76090 585 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 P4HA1P13674 534 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 CCDC130P13994 396 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 CHRNB2P17787 502 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 ATF6P18850 670 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 PCSK1P29120 753 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 TPM4P67936 248 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 ARID5BQ14865 1188 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 PTPROQ16827 1216 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 ARHGAP44Q17R89 818 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 CFAP221Q4G0U5 840 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 SLC39A12Q504Y0 691 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 ZNF394Q53GI3 561 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 MDH1BQ5I0G3 518 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 PPP1R26Q5T8A7 1209 aaPredicted RBP9.89□□□□□ -0.83
VPS35-211ENST00000569950 TPGS2Q68CL5 300 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 SMYD5Q6GMV2 418 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 SYCE2Q6PIF2 218 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 TMEM270Q6UE05 265 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 ENOSF1Q7L5Y1 443 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 IRF2BP2Q7Z5L9 587 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 TTC30AQ86WT1 665 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 METTL23Q86XA0 190 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 PALB2Q86YC2 1186 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 GPIHBP1Q8IV16 184 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 EFHBQ8N7U6 833 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 MICAL1Q8TDZ2 1067 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 TMEM176AQ96HP8 235 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 MRFAP1L1Q96HT8 127 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 MSLNLQ96KJ4 702 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 PGLYRP2Q96PD5 576 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 ANP32EQ9BTT0 268 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 NT5C1AQ9BXI3 368 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 OXCT2Q9BYC2 517 aaPredicted RBP9.89□□□□□ -0.83
VPS35-211ENST00000569950 SNX25Q9H3E2 840 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 TLE6Q9H808 572 aa9.89□□□□□ -0.83
VPS35-211ENST00000569950 NLRC4Q9NPP4 1024 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms