RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TSPY1Q01534 308 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 SPEM2Q0P670 501 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 SIM2Q14190 667 aaPredicted RBP16.07■□□□□ 0.16
CLN3-236ENST00000568558 ITPRIPL2Q3MIP1 535 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 LONP2Q86WA8 852 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 SYNPOQ8N3V7 929 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 PDCL2Q8N4E4 241 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 C1orf127Q8N9H9 656 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 LEO1Q8WVC0 666 aaPredicted RBP16.07■□□□□ 0.16
CLN3-236ENST00000568558 THG1LQ9NWX6 298 aaKnown RBP16.07■□□□□ 0.16
CLN3-236ENST00000568558 RBAKQ9NYW8 714 aaPredicted RBP16.07■□□□□ 0.16
CLN3-236ENST00000568558 CDV3Q9UKY7 258 aaKnown RBP16.07■□□□□ 0.16
CLN3-236ENST00000568558 L1RE1Q9UN81 338 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 AGAP1Q9UPQ3 857 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 CCL26Q9Y258 94 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 PCDHB13Q9Y5F0 798 aa16.07■□□□□ 0.16
CLN3-236ENST00000568558 FRMD3A2A2Y4 597 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 HRO43593 1189 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 RETP07949 1114 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 IDEP14735 1019 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 SYT1P21579 422 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 DDX6P26196 483 aaKnown RBP eCLIP16.06■□□□□ 0.16
CLN3-236ENST00000568558 CNR2P34972 360 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 AVPR1AP37288 418 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 GPR15P49685 360 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 SRSF5Q13243 272 aaKnown RBP16.06■□□□□ 0.16
CLN3-236ENST00000568558 ALCAMQ13740 583 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 NFE2Q16621 373 aaPredicted RBP16.06■□□□□ 0.16
CLN3-236ENST00000568558 CCDC73Q6ZRK6 1079 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 LRRC52Q8N7C0 313 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 MAB21L3Q8N8X9 362 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 STKLD1Q8NE28 680 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 CXorf38Q8TB03 319 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 CACTINQ8WUQ7 758 aaKnown RBP16.06■□□□□ 0.16
CLN3-236ENST00000568558 FAM83CQ9BQN1 747 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 ACBD6Q9BR61 282 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 PI4K2AQ9BTU6 479 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 HPS4Q9NQG7 708 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 GKN1Q9NS71 199 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 DDX43Q9NXZ2 648 aaKnown RBP16.06■□□□□ 0.16
CLN3-236ENST00000568558 MORC2Q9Y6X9 1032 aaPredicted RBP16.06■□□□□ 0.16
CLN3-236ENST00000568558 SPTBN2O15020 2390 aa16.06■□□□□ 0.16
CLN3-236ENST00000568558 GOLGA8IPA6NC78 632 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 GOLGA8JA6NMD2 632 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 SOBPA7XYQ1 873 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 HUS1O60921 280 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 LRP3O75074 770 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 PRPF40AO75400 957 aaKnown RBP16.05■□□□□ 0.16
CLN3-236ENST00000568558 CSH1P0DML2 217 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 CSH2P0DML3 217 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 STAT6P42226 847 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 CEBPZQ03701 1054 aaKnown RBP16.05■□□□□ 0.16
CLN3-236ENST00000568558 BFSP1Q12934 665 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 INTS6LQ5JSJ4 861 aaKnown RBP16.05■□□□□ 0.16
CLN3-236ENST00000568558 HEATR6Q6AI08 1181 aaKnown RBP16.05■□□□□ 0.16
CLN3-236ENST00000568558 SCARA3Q6AZY7 606 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 SYCP3Q8IZU3 236 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 TMEM86AQ8N2M4 240 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 USP13Q92995 863 aaPredicted RBP16.05■□□□□ 0.16
CLN3-236ENST00000568558 CHFRQ96EP1 664 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 FAM84AQ96KN4 292 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 PKMYT1Q99640 499 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 CBWD1Q9BRT8 395 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 FGFBP2Q9BYJ0 223 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 KIF9Q9HAQ2 790 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 ABCB6Q9NP58 842 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 TDP1Q9NUW8 608 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 GDAP2Q9NXN4 497 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 ITGA11Q9UKX5 1188 aa16.05■□□□□ 0.16
CLN3-236ENST00000568558 MAGED2Q9UNF1 606 aaPredicted RBP16.05■□□□□ 0.16
CLN3-236ENST00000568558 A0A087X0B3 334 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 TULP1O00294 542 aaPredicted RBP16.04■□□□□ 0.16
CLN3-236ENST00000568558 EXTL3O43909 919 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 TADA3O75528 432 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 ACAT1P24752 427 aaKnown RBP16.04■□□□□ 0.16
CLN3-236ENST00000568558 HOXA6P31267 233 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 HOXC13P31276 330 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 MYL7Q01449 175 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 RUNX3Q13761 415 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 SDHAF4Q5VUM1 108 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 TXNDC8Q6A555 127 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 TRIM68Q6AZZ1 485 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 MON1AQ86VX9 555 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 OSTM1Q86WC4 334 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 CSGALNACT2Q8N6G5 542 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 RIN3Q8TB24 985 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 SPATA18Q8TC71 538 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 MRPS31Q92665 395 aaKnown RBP16.04■□□□□ 0.16
CLN3-236ENST00000568558 USP28Q96RU2 1077 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 RTKNQ9BST9 563 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 EBF3Q9H4W6 596 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 PCIF1Q9H4Z3 704 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 PANK4Q9NVE7 773 aa16.04■□□□□ 0.16
CLN3-236ENST00000568558 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.04■□□□□ 0.16
CLN3-236ENST00000568558 OTOL1A6NHN0 477 aaPredicted RBP16.03■□□□□ 0.16
CLN3-236ENST00000568558 NOL4O94818 638 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 PRPF6O94906 941 aaKnown RBP16.03■□□□□ 0.16
CLN3-236ENST00000568558 KRT19P08727 400 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 CYP2F1P24903 491 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 RPL10AP62906 217 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms