RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TSPY1Q01534 308 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 SMARCB1Q12824 385 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 BIRC3Q13489 604 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 TRPC3Q13507 836 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 INTS6LQ5JSJ4 861 aaKnown RBP16.11■□□□□ 0.17
VPS39-210ENST00000568357 FRMD5Q7Z6J6 570 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 TMC8Q8IU68 726 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 SPPL2BQ8TCT7 592 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 ELMO3Q96BJ8 720 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 EEF2KMTQ96G04 330 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 LPIN3Q9BQK8 851 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 MRPL45Q9BRJ2 306 aaKnown RBP16.11■□□□□ 0.17
VPS39-210ENST00000568357 PI4K2AQ9BTU6 479 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 ASAH2Q9NR71 780 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 GDE1Q9NZC3 331 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 NME7Q9Y5B8 376 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 PCDHB5Q9Y5E4 795 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 NOTCH4Q99466 2003 aa16.11■□□□□ 0.17
VPS39-210ENST00000568357 MYO10Q9HD67 2058 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 IKBKBO14920 756 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 MAPK13O15264 365 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 KINO60870 393 aaKnown RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 STAU1O95793 577 aaKnown RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 PDGFRBP09619 1106 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 WARSP23381 471 aaKnown RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 RPL13P26373 211 aaKnown RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 ATICP31939 592 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 NUBP1P53384 320 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 NFE2Q16621 373 aaPredicted RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 COBLL1Q53SF7 1204 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 ISM2Q6H9L7 571 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 FAM171BQ6P995 826 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 SV2AQ7L0J3 742 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 ADSSL1Q8N142 457 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 LEMD2Q8NC56 503 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 SHKBP1Q8TBC3 707 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 GPR152Q8TDT2 470 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 GIPC2Q8TF65 315 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 PSMG2Q969U7 264 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 PLA2G2FQ9BZM2 168 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 ZNF334Q9HCZ1 680 aaPredicted RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 NXF1Q9UBU9 619 aaKnown RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 HOOK1Q9UJC3 728 aaKnown RBP16.1■□□□□ 0.17
VPS39-210ENST00000568357 ASB3Q9Y575 518 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 TSC2P49815 1807 aa16.1■□□□□ 0.17
VPS39-210ENST00000568357 TACC1O75410 805 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 KRT37O76014 449 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 CFHP08603 1231 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 CYP2F1P24903 491 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 PCSK1P29120 753 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 PSMC2P35998 433 aaKnown RBP16.09■□□□□ 0.17
VPS39-210ENST00000568357 GNL1P36915 607 aaPredicted RBP16.09■□□□□ 0.17
VPS39-210ENST00000568357 GPR15P49685 360 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 VAMP7P51809 220 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 PMS1P54277 932 aaKnown RBP16.09■□□□□ 0.17
VPS39-210ENST00000568357 PSMC1P62191 440 aaKnown RBP16.09■□□□□ 0.17
VPS39-210ENST00000568357 NCOA4Q13772 614 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 TEAD2Q15562 447 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 EDRF1Q3B7T1 1238 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 ZACNQ401N2 412 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 FAM78AQ5JUQ0 283 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 TANGO2Q6ICL3 276 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 MTSS1LQ765P7 747 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 FAM186BQ8IYM0 893 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 FAM200AQ8TCP9 573 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 NKD2Q969F2 451 aaPredicted RBP16.09■□□□□ 0.17
VPS39-210ENST00000568357 SYAP1Q96A49 352 aaPredicted RBP16.09■□□□□ 0.17
VPS39-210ENST00000568357 KXD1Q9BQD3 176 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 VRTNQ9H8Y1 702 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 CRTAC1Q9NQ79 661 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 MAN1B1Q9UKM7 699 aa16.09■□□□□ 0.17
VPS39-210ENST00000568357 A0A1W2PRU2 124 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 FAM163BP0C2L3 166 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 TRIM49P0CI25 452 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 TRIM49CP0CI26 452 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 SRFP11831 508 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 CD44P16070 742 aaKnown RBP16.08■□□□□ 0.16
VPS39-210ENST00000568357 BMP6P22004 513 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 CDH8P55286 799 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 MCCD1P59942 119 aaPredicted RBP16.08■□□□□ 0.16
VPS39-210ENST00000568357 TNNC1P63316 161 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 GPC5P78333 572 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 PPP3CAQ08209 521 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 SDHAF4Q5VUM1 108 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 ANKRD40Q6AI12 368 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 INTS8Q75QN2 995 aaKnown RBP16.08■□□□□ 0.16
VPS39-210ENST00000568357 GAREM2Q75VX8 874 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 ITIH5Q86UX2 942 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 SYT15Q9BQS2 421 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 WNT16Q9UBV4 365 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 CDH9Q9ULB4 789 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 GVINP1Q7Z2Y8 2422 aa16.08■□□□□ 0.16
VPS39-210ENST00000568357 DOCK8Q8NF50 2099 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 ECI2O75521 394 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 HMGA1P17096 107 aaKnown RBP16.07■□□□□ 0.16
VPS39-210ENST00000568357 NPR3P17342 541 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 FCARP24071 287 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 GCLMP48507 274 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 UBE2HP62256 183 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 DDR2Q16832 855 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms