RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 MGAT5BQ3V5L5 792 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 OVOS1Q6IE37 1185 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 DSTYKQ6XUX3 929 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 CCNI2Q6ZMN8 369 aaPredicted RBP12.79□□□□□ -0.36
CLK3-222ENST00000568232 TAS1R3Q7RTX0 852 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 OLIG1Q8TAK6 271 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 MTMR9Q96QG7 549 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 TCHPQ9BT92 498 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 OXCT2Q9BYC2 517 aaPredicted RBP12.79□□□□□ -0.36
CLK3-222ENST00000568232 PILRBQ9UKJ0 227 aa12.79□□□□□ -0.36
CLK3-222ENST00000568232 PCNX2A6NKB5 2137 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 CCDC169A6NNP5 214 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 K7EQS6 105 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 OPHN1O60890 802 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 MCF2P10911 925 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 P2RY2P41231 377 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 GUCY2FP51841 1108 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 C19orf57Q0VDD7 668 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 MYBPC2Q14324 1141 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 VEPH1Q14D04 833 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 PDGFRLQ15198 375 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 TRIP6Q15654 476 aaKnown RBP12.78□□□□□ -0.36
CLK3-222ENST00000568232 TAF12Q16514 161 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 SLC39A12Q504Y0 691 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 CPA6Q8N4T0 437 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 DEFB119Q8N690 84 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 STKLD1Q8NE28 680 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 OR10T2Q8NGX3 314 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 TNFRSF25Q93038 417 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 TUFT1Q9NNX1 390 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 STK24Q9Y6E0 443 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 WNT6Q9Y6F9 365 aa12.78□□□□□ -0.36
CLK3-222ENST00000568232 PPEF2O14830 753 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 SH3BP5O60239 455 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 NEMFO60524 1076 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 C1QL1O75973 258 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 F11P03951 625 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 FTH1P19P0C7X4 201 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 PROZP22891 400 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 AARSP49588 968 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLK3-222ENST00000568232 PEX3P56589 373 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 NLRP12P59046 1061 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 GFPT1Q06210 699 aaPredicted RBP12.77□□□□□ -0.37
CLK3-222ENST00000568232 DMP1Q13316 513 aaPredicted RBP12.77□□□□□ -0.37
CLK3-222ENST00000568232 MTF1Q14872 753 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 CRY1Q16526 586 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 LYSMD4Q5XG99 296 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 ARMCX5Q6P1M9 558 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 MPZL3Q6UWV2 235 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 SFTPA1Q8IWL2 248 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 MINDY1Q8N5J2 469 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 ADAMTS14Q8WXS8 1223 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 EXOC4Q96A65 974 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 MRPL4Q9BYD3 311 aaKnown RBP12.77□□□□□ -0.37
CLK3-222ENST00000568232 TMEM60Q9H2L4 133 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 DUS2Q9NX74 493 aaKnown RBP12.77□□□□□ -0.37
CLK3-222ENST00000568232 MMP17Q9ULZ9 603 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 SLC6A14Q9UN76 642 aa12.77□□□□□ -0.37
CLK3-222ENST00000568232 CXCL8P10145 99 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 HMGA1P17096 107 aaKnown RBP12.76□□□□□ -0.37
CLK3-222ENST00000568232 LRPAP1P30533 357 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 NPTX2P47972 431 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 TUFMP49411 452 aaKnown RBP12.76□□□□□ -0.37
CLK3-222ENST00000568232 DUOXA1Q1HG43 343 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 EML3Q32P44 896 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 PEAR1Q5VY43 1037 aaPredicted RBP12.76□□□□□ -0.37
CLK3-222ENST00000568232 CPLX2Q6PUV4 134 aaKnown RBP12.76□□□□□ -0.37
CLK3-222ENST00000568232 MARCH9Q86YJ5 346 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 OSCP1Q8WVF1 389 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 KIFAP3Q92845 792 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 ZNF274Q96GC6 653 aaPredicted RBP12.76□□□□□ -0.37
CLK3-222ENST00000568232 SLC22A12Q96S37 553 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 CYP2S1Q96SQ9 504 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 LINC00597Q9H2U6 94 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 KIF9Q9HAQ2 790 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 CAPN10Q9HC96 672 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 HSFX1Q9UBD0 423 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 DAXXQ9UER7 740 aaPredicted RBP12.76□□□□□ -0.37
CLK3-222ENST00000568232 PHLPP2Q6ZVD8 1323 aa12.76□□□□□ -0.37
CLK3-222ENST00000568232 SERPINF2P08697 491 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 XBP1P17861 261 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 TYMPP19971 482 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 PSMA5P28066 241 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 OPRD1P41143 372 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 IFNAR2P48551 515 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 ZBTB6Q15916 424 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 ECM1Q16610 540 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 MAP7D1Q3KQU3 841 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 KIAA1549LQ6ZVL6 1849 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 RUFY3Q7L099 469 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 SLCO6A1Q86UG4 719 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 LRRTM3Q86VH5 581 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 MON1AQ86VX9 555 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 ALLCQ8N6M5 410 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 SPACA7Q96KW9 195 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 SENP8Q96LD8 212 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 ZCWPW1Q9H0M4 648 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 BHMT2Q9H2M3 363 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 TMEM134Q9H6X4 195 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 ZDHHC4Q9NPG8 344 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms