RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ALDH1A1P00352 501 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 TAC1P20366 129 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 CYP2B6P20813 491 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 ADCYAP1R1P41586 468 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 LMNB2Q03252 620 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 TTLL4Q14679 1199 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 CCL14Q16627 93 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 CELF3Q5SZQ8 465 aaKnown RBP13.97□□□□□ -0.17
VPS4A-204ENST00000566354 CGB2Q6NT52 195 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 MIS18BP1Q6P0N0 1132 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 ANO5Q75V66 913 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 MAB21L3Q8N8X9 362 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.97□□□□□ -0.17
VPS4A-204ENST00000566354 SPIRE2Q8WWL2 714 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 USP6NLQ92738 828 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 RMDN2Q96LZ7 410 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 OSBPL8Q9BZF1 889 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 C17orf75Q9HAS0 396 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 VTA1Q9NP79 307 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 UBN1Q9NPG3 1134 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 GJD2Q9UKL4 321 aa13.97□□□□□ -0.17
VPS4A-204ENST00000566354 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.96□□□□□ -0.17
VPS4A-204ENST00000566354 STBD1O95210 358 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 CYP1A1P04798 512 aaPredicted RBP13.96□□□□□ -0.17
VPS4A-204ENST00000566354 MAGEA4P43358 317 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 LACTBP83111 547 aaPredicted RBP13.96□□□□□ -0.17
VPS4A-204ENST00000566354 PDCD2Q16342 344 aaPredicted RBP13.96□□□□□ -0.17
VPS4A-204ENST00000566354 LIN9Q5TKA1 542 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 KATNAL2Q8IYT4 538 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 GPD1LQ8N335 351 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 ZCCHC9Q8N567 271 aaKnown RBP13.96□□□□□ -0.17
VPS4A-204ENST00000566354 MAML1Q92585 1016 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 ATP6V0A1Q93050 837 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 C9orf72Q96LT7 481 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 CFAP57Q96MR6 1250 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 RBM15Q96T37 977 aaKnown RBP eCLIP13.96□□□□□ -0.17
VPS4A-204ENST00000566354 PCYT2Q99447 389 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 PI4K2AQ9BTU6 479 aa13.96□□□□□ -0.17
VPS4A-204ENST00000566354 MRPL47Q9HD33 250 aaKnown RBP13.96□□□□□ -0.17
VPS4A-204ENST00000566354 UMODL1Q5DID0 1318 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 MAGEB2O15479 319 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 UNC5CO95185 931 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 ATP4AP20648 1035 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 KLRC2P26717 231 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 TCF7P36402 384 aaPredicted RBP13.96□□□□□ -0.18
VPS4A-204ENST00000566354 VEGFBP49765 207 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 SLC18A1P54219 525 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 CAP1Q01518 475 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 BRDTQ58F21 947 aaPredicted RBP13.96□□□□□ -0.18
VPS4A-204ENST00000566354 PRAMEF19Q5SWL8 479 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 SLC39A4Q6P5W5 647 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 MON1BQ7L1V2 547 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 KIF2BQ8N4N8 673 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 EXD1Q8NHP7 514 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 FBF1Q8TES7 1133 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 KIFC3Q9BVG8 833 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 BATF3Q9NR55 127 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 SLC5A4Q9NY91 659 aa13.96□□□□□ -0.18
VPS4A-204ENST00000566354 ATP5HO75947 161 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 CALCAP01258 141 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 HOXC6P09630 235 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 GARTP22102 1010 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 FOXN2P32314 431 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 CETN2P41208 172 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 PSMC4P43686 418 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 ATP11AP98196 1134 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 PRKCEQ02156 737 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 MGAT5Q09328 741 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 WDR44Q5JSH3 913 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 C15orf39Q6ZRI6 1047 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 GSTA5Q7RTV2 222 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 ECHDC2Q86YB7 292 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 ELMO3Q96BJ8 720 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 FAXDC2Q96IV6 333 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 VCPIP1Q96JH7 1222 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 SPATA33Q96N06 139 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 RAB3IPQ96QF0 476 aaPredicted RBP13.95□□□□□ -0.18
VPS4A-204ENST00000566354 GPR20Q99678 358 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 ZNF302Q9NR11 478 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 TXLNGQ9NUQ3 528 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 STK38LQ9Y2H1 464 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 STARD13Q9Y3M8 1113 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 NUB1Q9Y5A7 615 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 MAFBQ9Y5Q3 323 aaPredicted RBP13.95□□□□□ -0.18
VPS4A-204ENST00000566354 IGKV6D-21A0A0A0MT36 114 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 TRPA1O75762 1119 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 WDR4P57081 412 aaKnown RBP13.95□□□□□ -0.18
VPS4A-204ENST00000566354 TRIM72Q6ZMU5 477 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 ANKS1BQ7Z6G8 1248 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 PHLDB2Q86SQ0 1253 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 TRIM50Q86XT4 487 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 TDRPQ86YL5 185 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 SEPT1Q8WYJ6 367 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 THOC1Q96FV9 657 aaKnown RBP13.95□□□□□ -0.18
VPS4A-204ENST00000566354 TTC25Q96NG3 672 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 ABHD16BQ9H3Z7 469 aa13.95□□□□□ -0.18
VPS4A-204ENST00000566354 EXOC1LA0A1B0GW35 172 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 RBM47A0AV96 593 aaKnown RBP13.94□□□□□ -0.18
VPS4A-204ENST00000566354 NOP56O00567 594 aaKnown RBP13.94□□□□□ -0.18
VPS4A-204ENST00000566354 HNRNPDLO14979 420 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms