RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 CLMPQ9H6B4 373 aa18.11■□□□□ 0.49
CLK3-217ENST00000566126 TOR4AQ9NXH8 423 aa18.11■□□□□ 0.49
CLK3-217ENST00000566126 TNFSF13BQ9Y275 285 aa18.11■□□□□ 0.49
CLK3-217ENST00000566126 DKK1O94907 266 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 F11P03951 625 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 SYPP08247 313 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 XRCC6P12956 609 aaKnown RBP eCLIP18.1■□□□□ 0.49
CLK3-217ENST00000566126 ATP2B1P20020 1258 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 MYBPC2Q14324 1141 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 MTF1Q14872 753 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 EML3Q32P44 896 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 TSGA10IPQ3SY00 556 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 TXNDC8Q6A555 127 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 Q6ZUG5 572 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 NCOA5Q9HCD5 579 aaKnown RBP18.1■□□□□ 0.49
CLK3-217ENST00000566126 DUS2Q9NX74 493 aaKnown RBP18.1■□□□□ 0.49
CLK3-217ENST00000566126 HSFX1Q9UBD0 423 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 TUBGCP4Q9UGJ1 667 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 PCOLCE2Q9UKZ9 415 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 WNT6Q9Y6F9 365 aa18.1■□□□□ 0.49
CLK3-217ENST00000566126 SGK1O00141 431 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 AP5Z1O43299 807 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 OPRD1P41143 372 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 CDR1P51861 262 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 CFHR1Q03591 330 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 ZNF33AQ06730 810 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 ZNF268Q14587 947 aaPredicted RBP18.09■□□□□ 0.49
CLK3-217ENST00000566126 RABEPKQ7Z6M1 372 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 SLFN12Q8IYM2 578 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 GIPC2Q8TF65 315 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 ATP2A3Q93084 1043 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 SEPT5Q99719 369 aaPredicted RBP18.09■□□□□ 0.49
CLK3-217ENST00000566126 PTPRHQ9HD43 1115 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 IGSF5Q9NSI5 407 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 ANK1P16157 1881 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 COL12A1Q99715 3063 aa18.09■□□□□ 0.49
CLK3-217ENST00000566126 TSC2P49815 1807 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 AARSP49588 968 aaKnown RBP eCLIP18.08■□□□□ 0.48
CLK3-217ENST00000566126 NLRP12P59046 1061 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 RPL6Q02878 288 aaKnown RBP18.08■□□□□ 0.48
CLK3-217ENST00000566126 BYSLQ13895 437 aaKnown RBP18.08■□□□□ 0.48
CLK3-217ENST00000566126 VEPH1Q14D04 833 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 ZNF77Q15935 545 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 GALNT17Q6IS24 598 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 APBB1IPQ7Z5R6 666 aaPredicted RBP18.08■□□□□ 0.48
CLK3-217ENST00000566126 SFTPA1Q8IWL2 248 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 ALLCQ8N6M5 410 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 TXNDC5Q8NBS9 432 aaKnown RBP18.08■□□□□ 0.48
CLK3-217ENST00000566126 HMGB4Q8WW32 186 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 AIFM3Q96NN9 605 aa18.08■□□□□ 0.48
CLK3-217ENST00000566126 BCCIPQ9P287 314 aaKnown RBP eCLIP18.08■□□□□ 0.48
CLK3-217ENST00000566126 MYO18AQ92614 2054 aaKnown RBP18.08■□□□□ 0.48
CLK3-217ENST00000566126 USP9XQ93008 2570 aaPredicted RBP18.07■□□□□ 0.48
CLK3-217ENST00000566126 CAPN9O14815 690 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 DDX6P26196 483 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLK3-217ENST00000566126 HSPA4P34932 840 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 TUFMP49411 452 aaKnown RBP18.07■□□□□ 0.48
CLK3-217ENST00000566126 MRPS21P82921 87 aaKnown RBP18.07■□□□□ 0.48
CLK3-217ENST00000566126 GAB4Q2WGN9 574 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 MGAT5BQ3V5L5 792 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 ZNF568Q3ZCX4 644 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 USP37Q86T82 979 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 SLC41A1Q8IVJ1 513 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 IL17RCQ8NAC3 791 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 ACAP3Q96P50 834 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 ACO2Q99798 780 aaKnown RBP18.07■□□□□ 0.48
CLK3-217ENST00000566126 STK24Q9Y6E0 443 aa18.07■□□□□ 0.48
CLK3-217ENST00000566126 A0A1W2PQD8 194 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 FAM149AA5PLN7 773 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 PYCARD-AS1I3L0S3 204 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 BAG4O95429 457 aaKnown RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 KLF8O95600 359 aaPredicted RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 ATXN1LP0C7T5 689 aaKnown RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 HMGA1P17096 107 aaKnown RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 IFNAR2P48551 515 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 EFNA5P52803 228 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 CCT2P78371 535 aaKnown RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 SRSF1Q07955 248 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLK3-217ENST00000566126 USP4Q13107 963 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 OVOS1Q6IE37 1185 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 MON1AQ86VX9 555 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 EFCAB13Q8IY85 973 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 PDCD7Q8N8D1 485 aaKnown RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 OR10T2Q8NGX3 314 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 BAHD1Q8TBE0 780 aaPredicted RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 FCRL3Q96P31 734 aaPredicted RBP18.06■□□□□ 0.48
CLK3-217ENST00000566126 NACC1Q96RE7 527 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 LINC00597Q9H2U6 94 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 POLD4Q9HCU8 107 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 KCNJ14Q9UNX9 436 aa18.06■□□□□ 0.48
CLK3-217ENST00000566126 ABLIM1O14639 778 aa18.05■□□□□ 0.48
CLK3-217ENST00000566126 SPATA31C1P0DKV0 1188 aa18.05■□□□□ 0.48
CLK3-217ENST00000566126 FAM160A1Q05DH4 1040 aa18.05■□□□□ 0.48
CLK3-217ENST00000566126 PPP2R5AQ15172 486 aa18.05■□□□□ 0.48
CLK3-217ENST00000566126 SLC10A6Q3KNW5 377 aa18.05■□□□□ 0.48
CLK3-217ENST00000566126 PLEKHG6Q3KR16 790 aa18.05■□□□□ 0.48
CLK3-217ENST00000566126 PCDHA12Q9UN75 941 aa18.05■□□□□ 0.48
CLK3-217ENST00000566126 TCRBV21S2A2A0A5A6 115 aa18.04■□□□□ 0.48
CLK3-217ENST00000566126 ADAM23O75077 832 aa18.04■□□□□ 0.48
CLK3-217ENST00000566126 HMGB1P09429 215 aaKnown RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms