RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NXF1Q9UBU9 619 aaKnown RBP18.48■□□□□ 0.55
CLN3-217ENST00000565354 FBXL5Q9UKA1 691 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 MIA3Q5JRA6 1907 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 KMT2BQ9UMN6 2715 aaPredicted RBP18.47■□□□□ 0.55
CLN3-217ENST00000565354 OR6C75A6NL08 312 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 HLA-DRAP01903 254 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 CYP11A1P05108 521 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 DCNP07585 359 aaKnown RBP18.47■□□□□ 0.55
CLN3-217ENST00000565354 SP9P0CG40 484 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 P4HA1P13674 534 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 MRPL58Q14197 206 aaKnown RBP18.47■□□□□ 0.55
CLN3-217ENST00000565354 SGSM1Q2NKQ1 1148 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 WDR72Q3MJ13 1102 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 ZNF667Q5HYK9 610 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 C1orf220Q5T0J3 134 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 SCARA3Q6AZY7 606 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 FAM114A1Q8IWE2 563 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 TMEM86AQ8N2M4 240 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 TOP6BLQ8N6T0 577 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 DLGAP2Q9P1A6 1054 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 SIT1Q9Y3P8 196 aa18.47■□□□□ 0.55
CLN3-217ENST00000565354 DOCK6Q96HP0 2047 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 ADAM12O43184 909 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 TGM5O43548 720 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 OAZ2O95190 189 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 VNN1O95497 513 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 SPATA31D3P0C874 917 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 ELF1P32519 619 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 MYL7Q01449 175 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 TYRO3Q06418 890 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 RAB33AQ14088 237 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 LIN9Q5TKA1 542 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 SPATA31D4Q6ZUB0 917 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 DPH6Q7L8W6 267 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 C1orf210Q8IVY1 113 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 ADGRF2Q8IZF7 708 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 PDCL2Q8N4E4 241 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 GPR152Q8TDT2 470 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 SMG7Q92540 1137 aaKnown RBP18.46■□□□□ 0.55
CLN3-217ENST00000565354 TAF4BQ92750 862 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 CNOT6LQ96LI5 555 aaKnown RBP18.46■□□□□ 0.55
CLN3-217ENST00000565354 ARHGEF3Q9NR81 526 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 DLL3Q9NYJ7 618 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 L1RE1Q9UN81 338 aa18.46■□□□□ 0.55
CLN3-217ENST00000565354 RFPL2O75678 378 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 STAU1O95793 577 aaKnown RBP18.45■□□□□ 0.54
CLN3-217ENST00000565354 MTIF2P46199 727 aaKnown RBP18.45■□□□□ 0.54
CLN3-217ENST00000565354 ROR1Q01973 937 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 CETN1Q12798 172 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 SLC8B1Q6J4K2 584 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 RSPO2Q6UXX9 243 aaPredicted RBP18.45■□□□□ 0.54
CLN3-217ENST00000565354 SCARA5Q6ZMJ2 495 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 FBXL13Q8NEE6 735 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 TAS1R2Q8TE23 839 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 ZNF707Q96C28 371 aaPredicted RBP18.45■□□□□ 0.54
CLN3-217ENST00000565354 NAT10Q9H0A0 1025 aaKnown RBP18.45■□□□□ 0.54
CLN3-217ENST00000565354 SNX25Q9H3E2 840 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 PLEKHA4Q9H4M7 779 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 THAP9Q9H5L6 903 aa18.45■□□□□ 0.54
CLN3-217ENST00000565354 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLN3-217ENST00000565354 DDX43Q9NXZ2 648 aaKnown RBP18.45■□□□□ 0.54
CLN3-217ENST00000565354 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLN3-217ENST00000565354 TSC2P49815 1807 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 PAPLNO95428 1278 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 C1RP00736 705 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 LHX1P48742 406 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 TSPY1Q01534 308 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 NFKBIBQ15653 356 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 WDR44Q5JSH3 913 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 C11orf57Q6ZUT1 292 aaPredicted RBP18.44■□□□□ 0.54
CLN3-217ENST00000565354 DCLK2Q8N568 766 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 SPATA18Q8TC71 538 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 HDAC7Q8WUI4 952 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 SLC35C1Q96A29 364 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 XYLT2Q9H1B5 865 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 DNAJC25Q9H1X3 360 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 SLC2A4RGQ9NR83 387 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.44■□□□□ 0.54
CLN3-217ENST00000565354 POLIQ9UNA4 740 aa18.44■□□□□ 0.54
CLN3-217ENST00000565354 SYCE3A1L190 88 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 WDR27A2RRH5 827 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 TBC1D4O60343 1298 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 AFPP02771 609 aaKnown RBP18.43■□□□□ 0.54
CLN3-217ENST00000565354 OR4Q2P0C623 313 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 LAMP2P13473 410 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 FMO5P49326 533 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 MARSP56192 900 aaKnown RBP18.43■□□□□ 0.54
CLN3-217ENST00000565354 HTR4Q13639 388 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 SOWAHAQ2M3V2 549 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 CBWD6Q4V339 395 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 CBWD3Q5JTY5 395 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 CBWD5Q5RIA9 395 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 TPGS2Q68CL5 300 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 TRIM59Q8IWR1 403 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 DCP1BQ8IZD4 617 aaKnown RBP18.43■□□□□ 0.54
CLN3-217ENST00000565354 SUMF1Q8NBK3 374 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 OR6B3Q8NGW1 331 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 ZNF461Q8TAF7 563 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 ENOX1Q8TC92 643 aaKnown RBP18.43■□□□□ 0.54
CLN3-217ENST00000565354 MED15Q96RN5 788 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms