RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RBM12Q9NTZ6 932 aaKnown RBP18.42■□□□□ 0.54
CLN3-216ENST00000565316 THG1LQ9NWX6 298 aaKnown RBP18.42■□□□□ 0.54
CLN3-216ENST00000565316 SIX4Q9UIU6 781 aa18.42■□□□□ 0.54
CLN3-216ENST00000565316 GOLGA8IPA6NC78 632 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 GOLGA8JA6NMD2 632 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 KIAA0391O15091 583 aaKnown RBP18.41■□□□□ 0.54
CLN3-216ENST00000565316 HUS1O60921 280 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 RBP5P82980 135 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 TNK2Q07912 1038 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 CCINQ13939 588 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 ITPRIPL2Q3MIP1 535 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 DGLUCYQ7Z3D6 616 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 LIMS2Q7Z4I7 341 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 SYNPOQ8N3V7 929 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 CSGALNACT2Q8N6G5 542 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 TTC8Q8TAM2 541 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 FAM84AQ96KN4 292 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 FAM83CQ9BQN1 747 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 SMG9Q9H0W8 520 aaKnown RBP18.41■□□□□ 0.54
CLN3-216ENST00000565316 PCIF1Q9H4Z3 704 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 PDE11AQ9HCR9 933 aa18.41■□□□□ 0.54
CLN3-216ENST00000565316 K7ESF4 209 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 GABRDO14764 452 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 STX6O43752 255 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 PRPF40AO75400 957 aaKnown RBP18.4■□□□□ 0.54
CLN3-216ENST00000565316 PRPF6O94906 941 aaKnown RBP18.4■□□□□ 0.54
CLN3-216ENST00000565316 CSH1P0DML2 217 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 CSH2P0DML3 217 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 HOXA6P31267 233 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 MYL7Q01449 175 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 BFSP1Q12934 665 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 E2F4Q16254 413 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 INTS6LQ5JSJ4 861 aaKnown RBP18.4■□□□□ 0.54
CLN3-216ENST00000565316 Q6ZS52 159 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 MON1AQ86VX9 555 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 OSTM1Q86WC4 334 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 CCDC65Q8IXS2 484 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 GPD1LQ8N335 351 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 TOP6BLQ8N6T0 577 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 LINC00301Q8NCQ3 95 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 USP13Q92995 863 aaPredicted RBP18.4■□□□□ 0.54
CLN3-216ENST00000565316 PI4K2AQ9BTU6 479 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 TNMDQ9H2S6 317 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 KBTBD4Q9NVX7 518 aa18.4■□□□□ 0.54
CLN3-216ENST00000565316 DDX43Q9NXZ2 648 aaKnown RBP18.4■□□□□ 0.54
CLN3-216ENST00000565316 TCHHQ07283 1943 aa18.39■□□□□ 0.54
CLN3-216ENST00000565316 NOL4O94818 638 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 HOXD13P35453 343 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 AVPR1AP37288 418 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 GPR15P49685 360 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 RPL10AP62906 217 aaKnown RBP18.39■□□□□ 0.53
CLN3-216ENST00000565316 ZNF268Q14587 947 aaPredicted RBP18.39■□□□□ 0.53
CLN3-216ENST00000565316 PON2Q15165 354 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 RSPO4Q2I0M5 234 aaPredicted RBP18.39■□□□□ 0.53
CLN3-216ENST00000565316 LAIR1Q6GTX8 287 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 PDILTQ8N807 584 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 MAB21L3Q8N8X9 362 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 TRMT2BQ96GJ1 504 aaKnown RBP18.39■□□□□ 0.53
CLN3-216ENST00000565316 MYRFLQ96LU7 910 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 MTMR12Q9C0I1 747 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 KIF9Q9HAQ2 790 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 HPS4Q9NQG7 708 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 GKN1Q9NS71 199 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 INTS13Q9NVM9 706 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 CCL26Q9Y258 94 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 SNX9Q9Y5X1 595 aa18.39■□□□□ 0.53
CLN3-216ENST00000565316 KIF26AQ9ULI4 1882 aaPredicted RBP18.39■□□□□ 0.53
CLN3-216ENST00000565316 SDHBP21912 280 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 ACAT1P24752 427 aaKnown RBP18.38■□□□□ 0.53
CLN3-216ENST00000565316 CYP2F1P24903 491 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 LHX1P48742 406 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 DMWDQ09019 674 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 STK38Q15208 465 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 DDR2Q16832 855 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 SOWAHAQ2M3V2 549 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 CFAP221Q4G0U5 840 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 TXNDC8Q6A555 127 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 CNNM4Q6P4Q7 775 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 DPH6Q7L8W6 267 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 GLIS3Q8NEA6 775 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 MRPS31Q92665 395 aaKnown RBP18.38■□□□□ 0.53
CLN3-216ENST00000565316 TRIM9Q9C026 710 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 LRRC27Q9C0I9 530 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 CUEDC2Q9H467 287 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 PARD6AQ9NPB6 346 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 TDP1Q9NUW8 608 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 C2orf42Q9NWW7 574 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 GMEB2Q9UKD1 530 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 GTF3C4Q9UKN8 822 aa18.38■□□□□ 0.53
CLN3-216ENST00000565316 PTPRJQ12913 1337 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 MED19A0JLT2 244 aaPredicted RBP18.37■□□□□ 0.53
CLN3-216ENST00000565316 ZNF233A6NK53 670 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 PRR5-ARHGAP8B1AHC4 643 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 CHURC1-FNTBB4DL54 471 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 K7ELQ4 463 aaPredicted RBP18.37■□□□□ 0.53
CLN3-216ENST00000565316 SPTLC2O15270 562 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 HRO43593 1189 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 PPP6R2O75170 966 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 TADA3O75528 432 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 KRT19P08727 400 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms