RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 TMX2Q9Y320 296 aa17.12■□□□□ 0.33
LINC00554-201ENST00000564841 PDLIM1O00151 329 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 FCHO1O14526 889 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 TXNDC9O14530 226 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 SLC16A3O15427 465 aaKnown RBP17.11■□□□□ 0.33
LINC00554-201ENST00000564841 ZWINTO95229 277 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 PENKP01210 267 aaPredicted RBP17.11■□□□□ 0.33
LINC00554-201ENST00000564841 RARBP10826 455 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 GALK1P51570 392 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 NBPF12Q5TAG4 269 aaPredicted RBP17.11■□□□□ 0.33
LINC00554-201ENST00000564841 PAOXQ6QHF9 649 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 RNF111Q6ZNA4 994 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 RGS9BPQ6ZS82 235 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 ARHGAP18Q8N392 663 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 LMO3Q8TAP4 145 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 QSER1Q2KHR3 1735 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 MYOCOSA0A1B0GUC4 107 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 MEI4A8MW99 385 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 SORBS3O60504 671 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 MYL2P10916 166 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 HADHBP55084 474 aaKnown RBP17.11■□□□□ 0.33
LINC00554-201ENST00000564841 TMED1Q13445 227 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 SEPT7Q16181 437 aaKnown RBP17.11■□□□□ 0.33
LINC00554-201ENST00000564841 RASSF3Q86WH2 238 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 ZBED8Q8IZ13 594 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 LENG1Q96BZ8 264 aaPredicted RBP17.11■□□□□ 0.33
LINC00554-201ENST00000564841 YIPF2Q9BWQ6 316 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 NDE1Q9NXR1 346 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 PCDHGB4Q9UN71 923 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 PCDHGB5Q9Y5G0 923 aa17.11■□□□□ 0.33
LINC00554-201ENST00000564841 POTEJP0CG39 1038 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 RINT1Q6NUQ1 792 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 AGBL3Q8NEM8 1001 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 NEU2Q9Y3R4 380 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 SLC4A7Q9Y6M7 1214 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 A0A0J9YVX5 310 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 PPP3CAQ08209 521 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 CCDC62Q6P9F0 684 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 ST13P4Q8IZP2 240 aaPredicted RBP17.1■□□□□ 0.33
LINC00554-201ENST00000564841 EFCAB3Q8N7B9 438 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 EPS8L1Q8TE68 723 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 DDX27Q96GQ7 796 aaKnown RBP17.1■□□□□ 0.33
LINC00554-201ENST00000564841 TRIM55Q9BYV6 548 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 MANSC1Q9H8J5 431 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 SLC7A8Q9UHI5 535 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 HACL1Q9UJ83 578 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 ANAPC7Q9UJX3 599 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 TDRKHQ9Y2W6 561 aaKnown RBP17.1■□□□□ 0.33
LINC00554-201ENST00000564841 EMSYQ7Z589 1322 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 GOLGA8IPA6NC78 632 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 GOLGA8JA6NMD2 632 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 NPM3O75607 178 aaKnown RBP17.1■□□□□ 0.33
LINC00554-201ENST00000564841 AQP4P55087 323 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 PDIA2Q13087 525 aaKnown RBP17.1■□□□□ 0.33
LINC00554-201ENST00000564841 GSTCDQ8NEC7 633 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 SKA1Q96BD8 255 aa17.1■□□□□ 0.33
LINC00554-201ENST00000564841 LARSQ9P2J5 1176 aaKnown RBP17.1■□□□□ 0.33
LINC00554-201ENST00000564841 SUPT3HO75486 399 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 BGNP21810 368 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 RPA1P27694 616 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 SSTR1P30872 391 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 SSTR3P32745 418 aaPredicted RBP17.09■□□□□ 0.33
LINC00554-201ENST00000564841 NCOA4Q13772 614 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 RASA2Q15283 850 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 C1orf146Q5VVC0 180 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 KAZNQ674X7 775 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 WDR18Q9BV38 432 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 TSSK1BQ9BXA7 367 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 ANGPTL2Q9UKU9 493 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 HEMK1Q9Y5R4 338 aaPredicted RBP17.09■□□□□ 0.33
LINC00554-201ENST00000564841 DCAF8L1A6NGE4 600 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 HNRNPCP07910 306 aaKnown RBP eCLIP17.09■□□□□ 0.33
LINC00554-201ENST00000564841 PABPC4LP0CB38 370 aaKnown RBP17.09■□□□□ 0.33
LINC00554-201ENST00000564841 DESP17661 470 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 PRELPP51888 382 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 ERMNQ8TAM6 284 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 SLCO2A1Q92959 643 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 TTC17Q96AE7 1141 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 HAUS1Q96CS2 278 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 DEFB129Q9H1M3 183 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 C10orf88Q9H8K7 445 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 RAVER2Q9HCJ3 691 aaKnown RBP17.09■□□□□ 0.33
LINC00554-201ENST00000564841 MARCOQ9UEW3 520 aaPredicted RBP17.09■□□□□ 0.33
LINC00554-201ENST00000564841 CCPG1Q9ULG6 757 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 TBC1D30Q9Y2I9 924 aa17.09■□□□□ 0.33
LINC00554-201ENST00000564841 BUD23O43709 281 aaKnown RBP17.08■□□□□ 0.33
LINC00554-201ENST00000564841 ASNSP08243 561 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 KITP10721 976 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 CDK16Q00536 496 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 BTKQ06187 659 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 SPP2Q13103 211 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 MSLNQ13421 630 aaPredicted RBP17.08■□□□□ 0.33
LINC00554-201ENST00000564841 ODR4Q5SWX8 454 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 LDHDQ86WU2 507 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 CLMNQ96JQ2 1002 aa17.08■□□□□ 0.33
LINC00554-201ENST00000564841 SMG5Q9UPR3 1016 aaKnown RBP17.08■□□□□ 0.33
LINC00554-201ENST00000564841 PI4K2BG5E9Z4 385 aa17.08■□□□□ 0.32
LINC00554-201ENST00000564841 SETSIPP0DME0 302 aa17.08■□□□□ 0.32
LINC00554-201ENST00000564841 KRT10P13645 584 aa17.08■□□□□ 0.32
LINC00554-201ENST00000564841 CD58P19256 250 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms