RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 C1orf127Q8N9H9 656 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 RIN3Q8TB24 985 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 HVCN1Q96D96 273 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 DNAJC19Q96DA6 116 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 ZNF560Q96MR9 790 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 ACCSQ96QU6 501 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 EBF3Q9H4W6 596 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 STK17AQ9UEE5 414 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 L1RE1Q9UN81 338 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 EXOC7Q9UPT5 735 aa18.16■□□□□ 0.5
CLN3-211ENST00000564091 COL4A2P08572 1712 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 GOLGA8IPA6NC78 632 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 GOLGA8JA6NMD2 632 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 GCNT3O95395 438 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 ACAT1P24752 427 aaKnown RBP18.15■□□□□ 0.5
CLN3-211ENST00000564091 PNPLA4P41247 253 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 CEBPZQ03701 1054 aaKnown RBP18.15■□□□□ 0.5
CLN3-211ENST00000564091 BFSP1Q12934 665 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 RUNX3Q13761 415 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 CCDC142Q17RM4 750 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 L1TD1Q5T7N2 865 aaKnown RBP18.15■□□□□ 0.5
CLN3-211ENST00000564091 SV2BQ7L1I2 683 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 NT5DC4Q86YG4 428 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 BRSK2Q8IWQ3 736 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 CHFRQ96EP1 664 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 CNTNAP3BQ96NU0 1288 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 FGFBP2Q9BYJ0 223 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 PANK2Q9BZ23 570 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 CNTNAP3Q9BZ76 1288 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 DDX43Q9NXZ2 648 aaKnown RBP18.15■□□□□ 0.5
CLN3-211ENST00000564091 SEL1LQ9UBV2 794 aa18.15■□□□□ 0.5
CLN3-211ENST00000564091 SRPRBQ9Y5M8 271 aaKnown RBP18.15■□□□□ 0.5
CLN3-211ENST00000564091 GDF9O60383 454 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 HUS1O60921 280 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 IDEP14735 1019 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 ARSAP15289 507 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 GAP43P17677 238 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 CYP2F1P24903 491 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 CSRP2Q16527 193 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 NFE2Q16621 373 aaPredicted RBP18.14■□□□□ 0.49
CLN3-211ENST00000564091 TMEM196Q5HYL7 178 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 FSTL4Q6MZW2 842 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 PRR23CQ6ZRP0 262 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 MON1AQ86VX9 555 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 WDR5BQ86VZ2 330 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 OSTM1Q86WC4 334 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 FAM160A2Q8N612 972 aaPredicted RBP18.14■□□□□ 0.49
CLN3-211ENST00000564091 CSGALNACT2Q8N6G5 542 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 NETO1Q8TDF5 533 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 NOC3LQ8WTT2 800 aaKnown RBP18.14■□□□□ 0.49
CLN3-211ENST00000564091 MRPS31Q92665 395 aaKnown RBP18.14■□□□□ 0.49
CLN3-211ENST00000564091 ACBD6Q9BR61 282 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 CBWD1Q9BRT8 395 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 FBRSL1Q9HCM7 1045 aaKnown RBP18.14■□□□□ 0.49
CLN3-211ENST00000564091 TDP1Q9NUW8 608 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 POLR3BQ9NW08 1133 aaPredicted RBP18.14■□□□□ 0.49
CLN3-211ENST00000564091 RBAKQ9NYW8 714 aaPredicted RBP18.14■□□□□ 0.49
CLN3-211ENST00000564091 ZMYM5Q9UJ78 669 aa18.14■□□□□ 0.49
CLN3-211ENST00000564091 ACACBO00763 2458 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 HCRTO43612 131 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 LRP3O75074 770 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 CSH1P0DML2 217 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 CSH2P0DML3 217 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 DDX6P26196 483 aaKnown RBP eCLIP18.13■□□□□ 0.49
CLN3-211ENST00000564091 HOXA6P31267 233 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 GRSF1Q12849 480 aaKnown RBP eCLIP18.13■□□□□ 0.49
CLN3-211ENST00000564091 INTS6LQ5JSJ4 861 aaKnown RBP18.13■□□□□ 0.49
CLN3-211ENST00000564091 NAIF1Q69YI7 327 aaPredicted RBP18.13■□□□□ 0.49
CLN3-211ENST00000564091 SYCP3Q8IZU3 236 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 TTC16Q8NEE8 873 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 CXorf38Q8TB03 319 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 CACTINQ8WUQ7 758 aaKnown RBP18.13■□□□□ 0.49
CLN3-211ENST00000564091 PCIF1Q9H4Z3 704 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 PDE11AQ9HCR9 933 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 GTF3C4Q9UKN8 822 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 PCDHB13Q9Y5F0 798 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 SNX9Q9Y5X1 595 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 TICRRQ7Z2Z1 1910 aa18.13■□□□□ 0.49
CLN3-211ENST00000564091 SLC30A4O14863 429 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 AXIN1O15169 862 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 TADA3O75528 432 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 PRPF6O94906 941 aaKnown RBP18.12■□□□□ 0.49
CLN3-211ENST00000564091 EGFP01133 1207 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 KRT19P08727 400 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 TXLNAP40222 546 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 MYL7Q01449 175 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 RESTQ13127 1097 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 CUL4AQ13619 759 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 CC2D1AQ6P1N0 951 aaPredicted RBP18.12■□□□□ 0.49
CLN3-211ENST00000564091 PKMYT1Q99640 499 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 TRPC7Q9HCX4 862 aa18.12■□□□□ 0.49
CLN3-211ENST00000564091 PDCD11Q14690 1871 aaKnown RBP18.12■□□□□ 0.49
CLN3-211ENST00000564091 A0A087X0B3 334 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 TRDMT1O14717 391 aaKnown RBP18.11■□□□□ 0.49
CLN3-211ENST00000564091 NOL4O94818 638 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 LDHAP00338 332 aaKnown RBP18.11■□□□□ 0.49
CLN3-211ENST00000564091 GARTP22102 1010 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 GALK1P51570 392 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 RPL10AP62906 217 aaKnown RBP18.11■□□□□ 0.49
CLN3-211ENST00000564091 RBP5P82980 135 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms