RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 SCOCQ9UIL1 159 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 TRIM33Q9UPN9 1127 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 H0Y3Z8 333 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 PDHA1P08559 390 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 MYL6P60660 151 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 STAT4Q14765 748 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 KIF22Q14807 665 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 R3HDM1Q15032 1099 aaKnown RBP10.98□□□□□ -0.65
RNF40-204ENST00000563683 CLEC16AQ2KHT3 1053 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 PRELID2Q8N945 189 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 UBA3Q8TBC4 463 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 SLC10A4Q96EP9 437 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 LRRC37BQ96QE4 947 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 SNX25Q9H3E2 840 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 STOML1Q9UBI4 398 aa10.98□□□□□ -0.65
RNF40-204ENST00000563683 GSTA2P09210 222 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 PDGFRAP16234 1089 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 BCAR1P56945 870 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 EIF3EP60228 445 aaKnown RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 GTF2BQ00403 316 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 TMEM62Q0P6H9 643 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 DYNC1I2Q13409 638 aaKnown RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 TTLL4Q14679 1199 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 MAP4K3Q8IVH8 894 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 P2RX7Q99572 595 aaKnown RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 LBHD1Q9BQE6 289 aaPredicted RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 USH1CQ9Y6N9 552 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ROBO1Q9Y6N7 1651 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ANKRD36CQ5JPF3 1778 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 TAF1P21675 1872 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ASTN2O75129 1339 aaPredicted RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 CIB2O75838 187 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 TPBGLP0DKB5 382 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 CLCN3P51790 818 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 MRPS9P82933 396 aaKnown RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 EFCAB12Q6NXP0 572 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 IRGCQ6NXR0 463 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ANO5Q75V66 913 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 VSIG10LQ86VR7 867 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 SEMA4DQ92854 862 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 KIF12Q96FN5 646 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 RMDN2Q96LZ7 410 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 TTC25Q96NG3 672 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 MMP19Q99542 508 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 SLC13A1Q9BZW2 595 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 NIF3L1Q9GZT8 377 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 NOD1Q9Y239 953 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 PCDHA3Q9Y5H8 950 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 UBIAD1Q9Y5Z9 338 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 COMMD10Q9Y6G5 202 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 CACNA1SQ13698 1873 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ARHGAP42A6NI28 874 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 NPM3O75607 178 aaKnown RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 MAPTP10636 758 aaKnown RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 SDC4P31431 198 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ARL1P40616 181 aaPredicted RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 TFDP2Q14188 446 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 MXD4Q14582 209 aaPredicted RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 SLC5A9Q2M3M2 681 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ATF7IP2Q5U623 682 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 MTHFD1LQ6UB35 978 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ZNF677Q86XU0 584 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 SLC9A9Q8IVB4 645 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 EMC1Q8N766 993 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 ENDOVQ8N8Q3 282 aaKnown RBP10.97□□□□□ -0.65
RNF40-204ENST00000563683 ZNF606Q8WXB4 792 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 MAML1Q92585 1016 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 PCDHB18PQ96TA0 734 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 RIPK3Q9Y572 518 aa10.97□□□□□ -0.65
RNF40-204ENST00000563683 HNRNPCL1O60812 293 aaKnown RBP10.96□□□□□ -0.65
RNF40-204ENST00000563683 PROSCO94903 275 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 RBP3P10745 1247 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 SKIP12755 728 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 ARL4AP40617 200 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 FMO1Q01740 532 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 DPY19L2P1Q6NXN4 242 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 VSTM1Q6UX27 236 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 DNAAF3Q8N9W5 541 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 TRAPPC9Q96Q05 1148 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 TMEM121Q9BTD3 319 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 DCLRE1BQ9H816 532 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 SNX9Q9Y5X1 595 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 PEX11AO75192 247 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 HOXD13P35453 343 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 DNAJC3Q13217 504 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 C3orf62Q6ZUJ4 267 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 SYDE1Q6ZW31 735 aaPredicted RBP10.96□□□□□ -0.65
RNF40-204ENST00000563683 ECHDC2Q86YB7 292 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 FAM71AQ8IYT1 594 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 ASAP3Q8TDY4 903 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 ITFG2Q969R8 447 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 DTNBP1Q96EV8 351 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 KREMEN1Q96MU8 473 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 LRRC4Q9HBW1 653 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 DDX56Q9NY93 547 aaKnown RBP10.96□□□□□ -0.65
RNF40-204ENST00000563683 MAP3K20Q9NYL2 800 aaKnown RBP10.96□□□□□ -0.65
RNF40-204ENST00000563683 NKX1-2Q9UD57 310 aaPredicted RBP10.96□□□□□ -0.65
RNF40-204ENST00000563683 COG5Q9UP83 839 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 C2CD2Q9Y426 696 aa10.96□□□□□ -0.65
RNF40-204ENST00000563683 IQANK1A0A1B0GTG1 560 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms