RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 PDILTQ8N807 584 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 GCNAQ96QF7 691 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 ACBD6Q9BR61 282 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 TMEM206Q9H813 350 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 PDE11AQ9HCR9 933 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 GKN1Q9NS71 199 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 FOXD4L1Q9NU39 408 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 GDAP2Q9NXN4 497 aa16.94■□□□□ 0.3
CLK3-211ENST00000563297 TGM1P22735 817 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 NASPP49321 788 aaPredicted RBP16.93■□□□□ 0.3
CLK3-211ENST00000563297 BFSP1Q12934 665 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 PON2Q15165 354 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 NFE2Q16621 373 aaPredicted RBP16.93■□□□□ 0.3
CLK3-211ENST00000563297 DDR2Q16832 855 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 RSPO4Q2I0M5 234 aaPredicted RBP16.93■□□□□ 0.3
CLK3-211ENST00000563297 DGKKQ5KSL6 1271 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 DGLUCYQ7Z3D6 616 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 CCDC65Q8IXS2 484 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 MAB21L3Q8N8X9 362 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 LINC00301Q8NCQ3 95 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 SECISBP2LQ93073 1101 aaKnown RBP16.93■□□□□ 0.3
CLK3-211ENST00000563297 PKMYT1Q99640 499 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 THG1LQ9NWX6 298 aaKnown RBP16.93■□□□□ 0.3
CLK3-211ENST00000563297 DDX43Q9NXZ2 648 aaKnown RBP16.93■□□□□ 0.3
CLK3-211ENST00000563297 SIX4Q9UIU6 781 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 ZMYM5Q9UJ78 669 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 ITGA11Q9UKX5 1188 aa16.93■□□□□ 0.3
CLK3-211ENST00000563297 SDK1Q7Z5N4 2213 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 K7ESF4 209 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 STX6O43752 255 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 CSH1P0DML2 217 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 CSH2P0DML3 217 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 ACAT1P24752 427 aaKnown RBP16.92■□□□□ 0.3
CLK3-211ENST00000563297 CYP2F1P24903 491 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 RBP5P82980 135 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 DMWDQ09019 674 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 CCINQ13939 588 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 ITPRIPL2Q3MIP1 535 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 INTS6LQ5JSJ4 861 aaKnown RBP16.92■□□□□ 0.3
CLK3-211ENST00000563297 SDHAF4Q5VUM1 108 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 TXNDC8Q6A555 127 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 Q6ZS52 159 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 OSTM1Q86WC4 334 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 TMEM86AQ8N2M4 240 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 GPD1LQ8N335 351 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 STKLD1Q8NE28 680 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 GLIS3Q8NEA6 775 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 NOC3LQ8WTT2 800 aaKnown RBP16.92■□□□□ 0.3
CLK3-211ENST00000563297 LEO1Q8WVC0 666 aaPredicted RBP16.92■□□□□ 0.3
CLK3-211ENST00000563297 USP13Q92995 863 aaPredicted RBP16.92■□□□□ 0.3
CLK3-211ENST00000563297 FAM83CQ9BQN1 747 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 C2orf42Q9NWW7 574 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 TFIP11Q9UBB9 837 aaKnown RBP16.92■□□□□ 0.3
CLK3-211ENST00000563297 GTF3C4Q9UKN8 822 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 MAGED2Q9UNF1 606 aaPredicted RBP16.92■□□□□ 0.3
CLK3-211ENST00000563297 CCL26Q9Y258 94 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 SNX9Q9Y5X1 595 aa16.92■□□□□ 0.3
CLK3-211ENST00000563297 OBSL1O75147 1896 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 SOBPA7XYQ1 873 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 CHURC1-FNTBB4DL54 471 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 GABRDO14764 452 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 KIAA0391O15091 583 aaKnown RBP16.91■□□□□ 0.3
CLK3-211ENST00000563297 HRO43593 1189 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 PAPSS2O95340 614 aaPredicted RBP16.91■□□□□ 0.3
CLK3-211ENST00000563297 KRT19P08727 400 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 DDX6P26196 483 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLK3-211ENST00000563297 HOXD13P35453 343 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 AVPR1AP37288 418 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 FNTBP49356 437 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 RPL10AP62906 217 aaKnown RBP16.91■□□□□ 0.3
CLK3-211ENST00000563297 MYL7Q01449 175 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 STK38Q15208 465 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 E2F4Q16254 413 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 LPAL2Q16609 132 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 SOWAHAQ2M3V2 549 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 LMBRD2Q68DH5 695 aaPredicted RBP16.91■□□□□ 0.3
CLK3-211ENST00000563297 MON1AQ86VX9 555 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 TOP6BLQ8N6T0 577 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 SPATA18Q8TC71 538 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 HPS3Q969F9 1004 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 MTMR12Q9C0I1 747 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 ABCB6Q9NP58 842 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 TDP1Q9NUW8 608 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 KBTBD4Q9NVX7 518 aa16.91■□□□□ 0.3
CLK3-211ENST00000563297 MED19A0JLT2 244 aaPredicted RBP16.9■□□□□ 0.3
CLK3-211ENST00000563297 OTOL1A6NHN0 477 aaPredicted RBP16.9■□□□□ 0.3
CLK3-211ENST00000563297 ZNF233A6NK53 670 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 SPTLC2O15270 562 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 HCRTO43612 131 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 TMEM191BP0C7N4 346 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 HOXC13P31276 330 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 LHX1P48742 406 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 RUNX3Q13761 415 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 CCDC142Q17RM4 750 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 LIMS2Q7Z4I7 341 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 SYNPOQ8N3V7 929 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 OR5B17Q8NGF7 314 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 RIN3Q8TB24 985 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 MRPS31Q92665 395 aaKnown RBP16.9■□□□□ 0.3
CLK3-211ENST00000563297 MYRFLQ96LU7 910 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms