RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PON2Q15165 354 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 CCDC142Q17RM4 750 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 MGAT5BQ3V5L5 792 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 DGKKQ5KSL6 1271 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 LMBRD2Q68DH5 695 aaPredicted RBP20.47■□□□□ 0.87
VPS35-202ENST00000561713 DNAJB7Q7Z6W7 309 aaPredicted RBP20.47■□□□□ 0.87
VPS35-202ENST00000561713 RALGPS2Q86X27 583 aaPredicted RBP20.47■□□□□ 0.87
VPS35-202ENST00000561713 FAM160A2Q8N612 972 aaPredicted RBP20.47■□□□□ 0.87
VPS35-202ENST00000561713 FAM200AQ8TCP9 573 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 ATXN3LQ9H3M9 355 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 OLFML3Q9NRN5 406 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 ABI2Q9NYB9 513 aaPredicted RBP20.47■□□□□ 0.87
VPS35-202ENST00000561713 RBAKQ9NYW8 714 aaPredicted RBP20.47■□□□□ 0.87
VPS35-202ENST00000561713 TFIP11Q9UBB9 837 aaKnown RBP20.47■□□□□ 0.87
VPS35-202ENST00000561713 EXOC7Q9UPT5 735 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 DPYSL4O14531 572 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 ITGB3P05106 788 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 GABRR2P28476 465 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 TNK2Q07912 1038 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 BFSP1Q12934 665 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 ST3GAL2Q16842 350 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 SV2CQ496J9 727 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 LRRTM3Q86VH5 581 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 METTL23Q86XA0 190 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 C1orf127Q8N9H9 656 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 LINC00301Q8NCQ3 95 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 GIPC2Q8TF65 315 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 PSMG2Q969U7 264 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 ZNF560Q96MR9 790 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 MTMR12Q9C0I1 747 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 ZSCAN16Q9H4T2 348 aaPredicted RBP20.46■□□□□ 0.87
VPS35-202ENST00000561713 GREB1Q4ZG55 1949 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 ANAPC1Q9H1A4 1944 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 PTPRJQ12913 1337 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 ATG2BQ96BY7 2078 aa20.46■□□□□ 0.87
VPS35-202ENST00000561713 HELZP42694 1942 aaKnown RBP20.45■□□□□ 0.86
VPS35-202ENST00000561713 SPTLC2O15270 562 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 HCRTO43612 131 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 PRAMEF12O95522 483 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 GPR15P49685 360 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 CCINQ13939 588 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 POSTNQ15063 836 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 ARHGAP29Q52LW3 1261 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 GPR158Q5T848 1215 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 CEP68Q76N32 757 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 DHX58Q96C10 678 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 SMG9Q9H0W8 520 aaKnown RBP20.45■□□□□ 0.86
VPS35-202ENST00000561713 PDE11AQ9HCR9 933 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 TMLHEQ9NVH6 421 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 DSEQ9UL01 958 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 AGAP1Q9UPQ3 857 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 ASB3Q9Y575 518 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 MORC2Q9Y6X9 1032 aaPredicted RBP20.45■□□□□ 0.86
VPS35-202ENST00000561713 USP24Q9UPU5 2620 aa20.45■□□□□ 0.86
VPS35-202ENST00000561713 RALGAPA1Q6GYQ0 2036 aa20.44■□□□□ 0.86
VPS35-202ENST00000561713 KPNA7A9QM74 516 aa20.44■□□□□ 0.86
VPS35-202ENST00000561713 KCNA4P22459 653 aa20.44■□□□□ 0.86
VPS35-202ENST00000561713 ACAT1P24752 427 aaKnown RBP20.44■□□□□ 0.86
VPS35-202ENST00000561713 E2F4Q16254 413 aa20.44■□□□□ 0.86
VPS35-202ENST00000561713 L1RE1Q9UN81 338 aa20.44■□□□□ 0.86
VPS35-202ENST00000561713 PCDHB13Q9Y5F0 798 aa20.44■□□□□ 0.86
VPS35-202ENST00000561713 EXTL3O43909 919 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 KRT19P08727 400 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 GARTP22102 1010 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 CASP1P29466 404 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 HOXA6P31267 233 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 ASIC1P78348 528 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 VEPH1Q14D04 833 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 CCDC6Q16204 474 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 ARHGAP15Q53QZ3 475 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 SDHAF4Q5VUM1 108 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 WDR5BQ86VZ2 330 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 OSTM1Q86WC4 334 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 CCDC65Q8IXS2 484 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 THEM5Q8N1Q8 247 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 PDCL2Q8N4E4 241 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 CHAMP1Q96JM3 812 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 IL21Q9HBE4 155 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 OBP2AQ9NY56 170 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 SIX4Q9UIU6 781 aa20.43■□□□□ 0.86
VPS35-202ENST00000561713 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.42■□□□□ 0.86
VPS35-202ENST00000561713 AXIN1O15169 862 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 FGF19O95750 216 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 PXNP49023 591 aaPredicted RBP20.42■□□□□ 0.86
VPS35-202ENST00000561713 ALCAMQ13740 583 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 SF3A2Q15428 464 aaKnown RBP20.42■□□□□ 0.86
VPS35-202ENST00000561713 PKN3Q6P5Z2 889 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 SHC4Q6S5L8 630 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 ITIH5Q86UX2 942 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 CBWD2Q8IUF1 395 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 SYNPOQ8N3V7 929 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 CXorf38Q8TB03 319 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 BPIFB1Q8TDL5 484 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 PI4K2AQ9BTU6 479 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 TRIM9Q9C026 710 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 ARRDC1-AS1Q9H2J1 176 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 TNMDQ9H2S6 317 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 FRYQ5TBA9 3013 aa20.42■□□□□ 0.86
VPS35-202ENST00000561713 CHD6Q8TD26 2715 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 FOXD2O60548 495 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms