RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MYL7Q01449 175 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 CUL4BQ13620 913 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 NFE2Q16621 373 aaPredicted RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 SOWAHAQ2M3V2 549 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 INTS6LQ5JSJ4 861 aaKnown RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 ZC3H14Q6PJT7 736 aaKnown RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 UNC13DQ70J99 1090 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 EPM2AIP1Q7L775 607 aaPredicted RBP10.98□□□□□ -0.65
LDLR-214ENST00000560628 GRAMD1CQ8IYS0 662 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 ADGRF2Q8IZF7 708 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 TMEM86AQ8N2M4 240 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 MAB21L3Q8N8X9 362 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 SCFD1Q8WVM8 642 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 ATRIPQ8WXE1 791 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 HPDLQ96IR7 371 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 GCNAQ96QF7 691 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 ACBD6Q9BR61 282 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 SLC39A2Q9NP94 309 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 AGPAT3Q9NRZ7 376 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 GDAP2Q9NXN4 497 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 FBXO4Q9UKT5 387 aa10.98□□□□□ -0.65
LDLR-214ENST00000560628 F5P12259 2224 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 EIF3DO15371 548 aaKnown RBP eCLIP10.97□□□□□ -0.65
LDLR-214ENST00000560628 KINO60870 393 aaKnown RBP10.97□□□□□ -0.65
LDLR-214ENST00000560628 CST3P01034 146 aaPredicted RBP10.97□□□□□ -0.65
LDLR-214ENST00000560628 PDGFRBP09619 1106 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 DLATP10515 647 aaKnown RBP10.97□□□□□ -0.65
LDLR-214ENST00000560628 CHRNB1P11230 501 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 TNNI1P19237 187 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 LMO2P25791 158 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 LHX1P48742 406 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 NLRP12P59046 1061 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 TNK2Q07912 1038 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 FCHO2Q0JRZ9 810 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 MYO1EQ12965 1108 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 SURF1Q15526 300 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 ZNF528Q3MIS6 628 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 RESP18Q5W5W9 173 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 TXNDC8Q6A555 127 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 CNNM4Q6P4Q7 775 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 TMEM150AQ86TG1 271 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 SPATA2LQ8IUW3 424 aaPredicted RBP10.97□□□□□ -0.65
LDLR-214ENST00000560628 SCN4BQ8IWT1 228 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 DCLK2Q8N568 766 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 TOP6BLQ8N6T0 577 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 BPIFB1Q8TDL5 484 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 CCDC127Q96BQ5 260 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 CHAMP1Q96JM3 812 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 PKMYT1Q99640 499 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 HINFPQ9BQA5 517 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 KIAA1586Q9HCI6 787 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 GKN1Q9NS71 199 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 RBM12Q9NTZ6 932 aaKnown RBP10.97□□□□□ -0.65
LDLR-214ENST00000560628 GTSE1Q9NYZ3 720 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 SERTAD1Q9UHV2 236 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 RCOR1Q9UKL0 485 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 CFAP45Q9UL16 551 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 FAM186AA6NE01 2351 aa10.97□□□□□ -0.65
LDLR-214ENST00000560628 GABRDO14764 452 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 CSH1P0DML2 217 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 CSH2P0DML3 217 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 PDIA4P13667 645 aaKnown RBP10.96□□□□□ -0.65
LDLR-214ENST00000560628 PCSK1P29120 753 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 PSMC1P62191 440 aaKnown RBP10.96□□□□□ -0.65
LDLR-214ENST00000560628 RPL10AP62906 217 aaKnown RBP10.96□□□□□ -0.65
LDLR-214ENST00000560628 EHHADHQ08426 723 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 SNRNP35Q16560 246 aaKnown RBP10.96□□□□□ -0.65
LDLR-214ENST00000560628 ARHGAP29Q52LW3 1261 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 TXNDC11Q6PKC3 985 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 TRAPPC11Q7Z392 1133 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 WDR49Q8IV35 697 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 CEP57L1Q8IYX8 460 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 CMTM8Q8IZV2 173 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 CELF5Q8N6W0 485 aaKnown RBP10.96□□□□□ -0.65
LDLR-214ENST00000560628 XXYLT1Q8NBI6 393 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 SUMF1Q8NBK3 374 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 TTC16Q8NEE8 873 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 ZNF516Q92618 1163 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 FNBP1Q96RU3 617 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 MMS19Q96T76 1030 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 CHRDQ9H2X0 955 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 C8orf33Q9H7E9 229 aaPredicted RBP10.96□□□□□ -0.65
LDLR-214ENST00000560628 MAGEF1Q9HAY2 307 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 THG1LQ9NWX6 298 aaKnown RBP10.96□□□□□ -0.65
LDLR-214ENST00000560628 ZSCAN32Q9NX65 697 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 OBP2AQ9NY56 170 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 CCL26Q9Y258 94 aa10.96□□□□□ -0.65
LDLR-214ENST00000560628 USP34Q70CQ2 3546 aa10.96□□□□□ -0.66
LDLR-214ENST00000560628 MIA3Q5JRA6 1907 aa10.96□□□□□ -0.66
LDLR-214ENST00000560628 PVALEFA0A1B0GWK0 134 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 SPECC1L-ADORA2AF8WAN1 911 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 WEE1P30291 646 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 CTHP32929 405 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 AVPR1AP37288 418 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 CYP24A1Q07973 514 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 GAS6Q14393 721 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 PSMD6Q15008 389 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 PON2Q15165 354 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 WDR44Q5JSH3 913 aa10.95□□□□□ -0.66
LDLR-214ENST00000560628 ATL3Q6DD88 541 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms