RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ZNF541Q9H0D2 1346 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 LIASO43766 372 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 ASMTLO95671 621 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 ACO1P21399 889 aaKnown RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 ATP11AP98196 1134 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 MKRN3Q13064 507 aaKnown RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 EFTUD2Q15029 972 aaKnown RBP eCLIP11.91□□□□□ -0.5
CUX1-218ENST00000560541 RNF43Q68DV7 783 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 C15orf39Q6ZRI6 1047 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 CCDC60Q8IWA6 550 aaPredicted RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 ABRAQ8N0Z2 381 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 OPTNQ96CV9 577 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 CFAP57Q96MR6 1250 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 MCEEQ96PE7 176 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 HAPLN2Q9GZV7 340 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 SLC38A10Q9HBR0 1119 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 NUB1Q9Y5A7 615 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 CBX6O95503 412 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 SFNP31947 248 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 USP46P62068 366 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 SLC1A5Q15758 541 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 STYK1Q6J9G0 422 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 C14orf80Q86SX3 495 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 LARGE2Q8N3Y3 721 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 BBOF1Q8ND07 529 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 OR5B17Q8NGF7 314 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 EXD1Q8NHP7 514 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 CCHCR1Q8TD31 782 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 SPIRE2Q8WWL2 714 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 MRPL47Q9HD33 250 aaKnown RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 AGO2Q9UKV8 859 aaKnown RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 PHF24Q9UPV7 400 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 ZNF646O15015 1829 aaPredicted RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 GOLGA8RI6L899 631 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 SGK1O00141 431 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 DNALI1O14645 258 aaPredicted RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 LIN7AO14910 233 aaPredicted RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 APBA3O96018 575 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 C4BPAP04003 597 aaKnown RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 FGFR1P11362 822 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 CCND1P24385 295 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 PRKCEQ02156 737 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 PDIA2Q13087 525 aaKnown RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 CBX3Q13185 183 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 C16orf87Q6PH81 154 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 SAMD3Q8N6K7 520 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 FEZF2Q8TBJ5 459 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 LRRC37BQ96QE4 947 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 SMC6Q96SB8 1091 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 KLF6Q99612 283 aaPredicted RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 NTPCRQ9BSD7 190 aaKnown RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 KIAA1683Q9H0B3 1180 aa11.91□□□□□ -0.5
CUX1-218ENST00000560541 RBAKQ9NYW8 714 aaPredicted RBP11.91□□□□□ -0.5
CUX1-218ENST00000560541 COL2A1P02458 1487 aaPredicted RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 LRRIQ4A6NIV6 560 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 EXTL3O43909 919 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 CCNB1P14635 433 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 GARTP22102 1010 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 POLGP54098 1239 aaPredicted RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 DYNC1I2Q13409 638 aaKnown RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 MTMR2Q13614 643 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 SPARCL1Q14515 664 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 ZNF677Q86XU0 584 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 SLITRK1Q96PX8 696 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 LBHD1Q9BQE6 289 aaPredicted RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 ALG13Q9NP73 1137 aaKnown RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 UBAP1Q9NZ09 502 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 NKX1-2Q9UD57 310 aaPredicted RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 SMAPO00193 183 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 ALOX15P16050 662 aaPredicted RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 ATP2A2P16615 1042 aaKnown RBP11.9□□□□□ -0.5
CUX1-218ENST00000560541 OGDHQ02218 1023 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 ZNF252P-AS1Q0IIN9 211 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 SMTNL2Q2TAL5 461 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 CYP4A22Q5TCH4 519 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 PLEKHA7Q6IQ23 1121 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 CEP128Q6ZU80 1094 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 LMNTD2Q8IXW0 634 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 LRRC8CQ8TDW0 803 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 SENP7Q9BQF6 1050 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 CYP26B1Q9NR63 512 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 CHMP2BQ9UQN3 213 aa11.9□□□□□ -0.5
CUX1-218ENST00000560541 H0Y3Z8 333 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 WDR46O15213 610 aaKnown RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 ZC3H11AO75152 810 aaKnown RBP eCLIP11.89□□□□□ -0.511e-7■■■□□ 17.7
CUX1-218ENST00000560541 NR3C2P08235 984 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 POTEJP0CG39 1038 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 SSTR1P30872 391 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 OVGP1Q12889 678 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 PTP4A2Q12974 167 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 SYCP2LQ5T4T6 812 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 DCUN1D2Q6PH85 259 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ATG4CQ96DT6 458 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 CENPOQ9BU64 300 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 TARS2Q9BW92 718 aaKnown RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 MAK16Q9BXY0 300 aaKnown RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 PARVAQ9NVD7 372 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 HNRNPRO43390 633 aaKnown RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 DGAT1O75907 488 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 STBD1O95210 358 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms