RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CAVIN2O95810 425 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 HAPLN1P10915 354 aaPredicted RBP13.87□□□□□ -0.19
NEDD8-208ENST00000560427 LMO2P25791 158 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 MAGEA11P43364 429 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 YWHAEP62258 255 aaKnown RBP13.87□□□□□ -0.19
NEDD8-208ENST00000560427 VEPH1Q14D04 833 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 IQCEQ6IPM2 695 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 ITIH5Q86UX2 942 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 SPATA2LQ8IUW3 424 aaPredicted RBP13.87□□□□□ -0.19
NEDD8-208ENST00000560427 B3GALNT2Q8NCR0 500 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 ADAMTS19Q8TE59 1207 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 FAM81BQ96LP2 452 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 NT5C1BQ96P26 610 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 FUCA2Q9BTY2 467 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 SDCBP2Q9H190 292 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 DNAJC25Q9H1X3 360 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 POMKQ9H5K3 350 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 ABI2Q9NYB9 513 aaPredicted RBP13.87□□□□□ -0.19
NEDD8-208ENST00000560427 GTF3C4Q9UKN8 822 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 ATP8B3O60423 1300 aa13.87□□□□□ -0.19
NEDD8-208ENST00000560427 MYBPHLA2RUH7 354 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 KCNJ18B7U540 433 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CCL16O15467 120 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CILPO75339 1184 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 TPM2P07951 284 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 PTPN1P18031 435 aaKnown RBP13.86□□□□□ -0.19
NEDD8-208ENST00000560427 RAP1GAPP47736 663 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 EPHB3P54753 998 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CDH8P55286 799 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 PSMC1P62191 440 aaKnown RBP13.86□□□□□ -0.19
NEDD8-208ENST00000560427 RPL10AP62906 217 aaKnown RBP13.86□□□□□ -0.19
NEDD8-208ENST00000560427 ZP2Q05996 745 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 TWF1Q12792 350 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CUL2Q13617 745 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 KCNJ12Q14500 433 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 MGAT5BQ3V5L5 792 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 TCP11X2Q5H9J9 407 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CDKAL1Q5VV42 579 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 VSTM1Q6UX27 236 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 OTOP3Q7RTS5 596 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CREBRFQ8IUR6 639 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CRYBG2Q8N1P7 616 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 ANKRD20A12PQ8NF67 263 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 MYLPFQ96A32 169 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 PCED1BQ96HM7 432 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 SEPT5Q99719 369 aaPredicted RBP13.86□□□□□ -0.19
NEDD8-208ENST00000560427 TUBGCP2Q9BSJ2 902 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 NT5C1AQ9BXI3 368 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 ELOVL4Q9GZR5 314 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CRISPLD1Q9H336 500 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 CRTAC1Q9NQ79 661 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 TMLHEQ9NVH6 421 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 DENND4AQ7Z401 1863 aa13.86□□□□□ -0.19
NEDD8-208ENST00000560427 PRUNE2Q8WUY3 3088 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 SYCE3A1L190 88 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 C19orf67A6NJJ6 358 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 SMTNL1A8MU46 457 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 MICAL2O94851 1124 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 FGF19O95750 216 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 PDGFRBP09619 1106 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 WEE2P0C1S8 567 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 PTPN2P17706 415 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 NDST1P52848 882 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 EPHA5P54756 1037 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 GCNT1Q02742 428 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 ANO6Q4KMQ2 910 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 PABPC1LQ4VXU2 614 aaKnown RBP13.85□□□□□ -0.19
NEDD8-208ENST00000560427 MDH1BQ5I0G3 518 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 GBP6Q6ZN66 633 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 EHBP1Q8NDI1 1231 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 LMO3Q8TAP4 145 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 PSMG2Q969U7 264 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 JAKMIP2Q96AA8 810 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 ACSF2Q96CM8 615 aaPredicted RBP13.85□□□□□ -0.19
NEDD8-208ENST00000560427 ZNF512Q96ME7 567 aaPredicted RBP13.85□□□□□ -0.19
NEDD8-208ENST00000560427 UHRF1Q96T88 793 aaPredicted RBP13.85□□□□□ -0.19
NEDD8-208ENST00000560427 NDST4Q9H3R1 872 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 ASAH2Q9NR71 780 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 CISHQ9NSE2 258 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 SAMSN1Q9NSI8 373 aaKnown RBP13.85□□□□□ -0.19
NEDD8-208ENST00000560427 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.85□□□□□ -0.19
NEDD8-208ENST00000560427 GCNT4Q9P109 453 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 NME7Q9Y5B8 376 aa13.85□□□□□ -0.19
NEDD8-208ENST00000560427 ZFP37Q9Y6Q3 630 aaPredicted RBP13.85□□□□□ -0.19
NEDD8-208ENST00000560427 LOC730098B7Z3J9 87 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 ZNF197O14709 1029 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 TRIM66O15016 1216 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 HCRTO43612 131 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 ATP2C2O75185 946 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 LRRN2O75325 713 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 RHOP08100 348 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 FSHRP23945 695 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 CYP27A1Q02318 531 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 NFKBIBQ15653 356 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 VWA3BQ502W6 1294 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 MIIPQ5JXC2 388 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 PDZD4Q76G19 769 aaPredicted RBP13.84□□□□□ -0.19
NEDD8-208ENST00000560427 ENOSF1Q7L5Y1 443 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 GRASPQ7Z6J2 395 aaPredicted RBP13.84□□□□□ -0.19
NEDD8-208ENST00000560427 PLCD3Q8N3E9 789 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms