RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 TAF12Q16514 161 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 PABPC1LQ4VXU2 614 aaKnown RBP9.14□□□□□ -0.95
USP3-217ENST00000560070 ZNF394Q53GI3 561 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 INTS6LQ5JSJ4 861 aaKnown RBP9.14□□□□□ -0.95
USP3-217ENST00000560070 CYP4A22Q5TCH4 519 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 LIMS2Q7Z4I7 341 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 DNAJB7Q7Z6W7 309 aaPredicted RBP9.14□□□□□ -0.95
USP3-217ENST00000560070 ACOT1Q86TX2 421 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 RNF135Q8IUD6 432 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 TDRD5Q8NAT2 981 aaKnown RBP9.14□□□□□ -0.95
USP3-217ENST00000560070 FBXL13Q8NEE6 735 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 RSAD2Q8WXG1 361 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 TAF4BQ92750 862 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 SLC35C1Q96A29 364 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 ACSF2Q96CM8 615 aaPredicted RBP9.14□□□□□ -0.95
USP3-217ENST00000560070 IMPG2Q9BZV3 1241 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 CRTAC1Q9NQ79 661 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 PRKAG3Q9UGI9 489 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 DACH1Q9UI36 760 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 MRPS23Q9Y3D9 190 aaKnown RBP9.14□□□□□ -0.95
USP3-217ENST00000560070 NR2E1Q9Y466 385 aa9.14□□□□□ -0.95
USP3-217ENST00000560070 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP3-217ENST00000560070 PES1O00541 588 aaKnown RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 NRG2O14511 850 aaPredicted RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 N4BP1O75113 896 aaKnown RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 STAU1O95793 577 aaKnown RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 GNA14O95837 355 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 HOXA9P31269 272 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 GRIK1P39086 918 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 FMO5P49326 533 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 NOP14P78316 857 aaKnown RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 CYP26C1Q6V0L0 522 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 C11orf57Q6ZUT1 292 aaPredicted RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 PDZD4Q76G19 769 aaPredicted RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 OTOP3Q7RTS5 596 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 IRF2BP1Q8IU81 584 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 SPPL2BQ8TCT7 592 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 MYLPFQ96A32 169 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 CNOT6LQ96LI5 555 aaKnown RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 CRACR2AQ9BSW2 395 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 B3GNT5Q9BYG0 378 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 DNAJC25Q9H1X3 360 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 EPHX3Q9H6B9 360 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 SAMSN1Q9NSI8 373 aaKnown RBP9.13□□□□□ -0.95
USP3-217ENST00000560070 HMGXB4Q9UGU5 601 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 MUTYHQ9UIF7 546 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 MAFFQ9ULX9 164 aa9.13□□□□□ -0.95
USP3-217ENST00000560070 A0A1W2PRU2 124 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 AFPP02771 609 aaKnown RBP9.12□□□□□ -0.95
USP3-217ENST00000560070 FAM163BP0C2L3 166 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 CEBPBP17676 345 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 ERCC5P28715 1186 aaPredicted RBP9.12□□□□□ -0.95
USP3-217ENST00000560070 ADORA2BP29275 332 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 CCR2P41597 374 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 ASPAP45381 313 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 SMARCB1Q12824 385 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 PLD1Q13393 1074 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 VEPH1Q14D04 833 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 NFE2Q16621 373 aaPredicted RBP9.12□□□□□ -0.95
USP3-217ENST00000560070 SLC5A9Q2M3M2 681 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 FAM171BQ6P995 826 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 C4orf50Q6ZRC1 276 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 RRAGAQ7L523 313 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 TRIM59Q8IWR1 403 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 C12orf29Q8N999 325 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 B3GALNT2Q8NCR0 500 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 EHBP1Q8NDI1 1231 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 MYCBPAPQ8TBZ2 947 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 PCED1BQ96HM7 432 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 HEXIM2Q96MH2 286 aaKnown RBP9.12□□□□□ -0.95
USP3-217ENST00000560070 TWNKQ96RR1 684 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 PKMYT1Q99640 499 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 ARID3AQ99856 593 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 ZNF518BQ9C0D4 1074 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 NIF3L1Q9GZT8 377 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 ATXN3LQ9H3M9 355 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 SMOC2Q9H3U7 446 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 VRTNQ9H8Y1 702 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 ZNF334Q9HCZ1 680 aaPredicted RBP9.12□□□□□ -0.95
USP3-217ENST00000560070 ASAH2Q9NR71 780 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 FAM49BQ9NUQ9 324 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 ANO10Q9NW15 660 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 CDH7Q9ULB5 785 aa9.12□□□□□ -0.95
USP3-217ENST00000560070 SLC38A8A6NNN8 435 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 ZNF197O14709 1029 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 CALCAP01258 141 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 ATXN8OSP0DMR3 200 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 LAMP2P13473 410 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 CCDC130P13994 396 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 PRKCSHP14314 528 aaPredicted RBP9.11□□□□□ -0.95
USP3-217ENST00000560070 ATF6P18850 670 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 GABRR2P28476 465 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 CACNA2D1P54289 1103 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 MCCD1P59942 119 aaPredicted RBP9.11□□□□□ -0.95
USP3-217ENST00000560070 RPL10AP62906 217 aaKnown RBP9.11□□□□□ -0.95
USP3-217ENST00000560070 CYP4F8P98187 520 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 APBA1Q02410 837 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 TYRO3Q06418 890 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 ENPEPQ07075 957 aa9.11□□□□□ -0.95
USP3-217ENST00000560070 CETN1Q12798 172 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms